View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_107 (Length: 218)
Name: NF11854_low_107
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23597571 - 23597773
Alignment:
| Q |
1 |
gtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaaga |
100 |
Q |
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| T |
23597571 |
gtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaaga |
23597670 |
T |
|
| Q |
101 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtat |
200 |
Q |
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| T |
23597671 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtat |
23597770 |
T |
|
| Q |
201 |
ttg |
203 |
Q |
| |
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||| |
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| T |
23597771 |
ttg |
23597773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23588719 - 23588921
Alignment:
| Q |
1 |
gtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaaga |
100 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23588719 |
gtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaaga |
23588818 |
T |
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| Q |
101 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtat |
200 |
Q |
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| T |
23588819 |
aaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcat |
23588918 |
T |
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| Q |
201 |
ttg |
203 |
Q |
| |
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||| |
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| T |
23588919 |
ttg |
23588921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 8018423 - 8018586
Alignment:
| Q |
25 |
aactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgaggggg |
124 |
Q |
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||||| || |||||||||||||||||||| |||||||| ||||||| ||| ||| | || |||| || || ||||| ||||| ||||| ||||| | | |
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| T |
8018423 |
aactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatgatgcaattgacgctg |
8018522 |
T |
|
| Q |
125 |
ctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaagga |
188 |
Q |
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| T |
8018523 |
caattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaagga |
8018586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 8101828 - 8101659
Alignment:
| Q |
22 |
gagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgagg |
121 |
Q |
| |
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||||||||||| ||||||||||| ||||| || |||||||| ||||| ||| ||| | || | | || |||||| | ||||| ||||| ||||||| |
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| T |
8101828 |
gagaactatgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagg |
8101729 |
T |
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| Q |
122 |
gggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagct |
191 |
Q |
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| || ||||||||| | |||| ||| || |||| || || ||||| ||||| ||||||||||||||||| |
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| T |
8101728 |
gagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagct |
8101659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 39984678 - 39984641
Alignment:
| Q |
151 |
cttggagaggctgatgaatttgaggacaagatgaagga |
188 |
Q |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaagga |
39984641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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