View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_108 (Length: 216)
Name: NF11854_low_108
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 48363471 - 48363653
Alignment:
| Q |
16 |
catgaccaagatcatgatcatgggttgaaagtgtttgagtcttatgaaaaagagcttgcttcaaagtcaacacctttaaactgtgcttctcctgacataa |
115 |
Q |
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| T |
48363471 |
catgaccaagatcatgatcatgggttgaaagtgtttgaatcttatgaaaaagagcttgcttcaaagtcaacacctttaaactgtgcttctcctgacataa |
48363570 |
T |
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| Q |
116 |
ggtttaccccaagcccaaatacaccccctcaagctcctgctacaaatgaaaaccttaccacgagaaaaactctccgaagatct |
198 |
Q |
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| T |
48363571 |
ggttcaccccaagcccaaatacaccccctcaagttcctgctacaaatgaaaaccttaccacgagaaaaactctccgaagatct |
48363653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 48399050 - 48398939
Alignment:
| Q |
77 |
caaagtcaacacctttaaactgtgcttctcctgacataaggtttaccccaagcccaaatacaccccctcaagctcctgctacaaatgaaaaccttaccac |
176 |
Q |
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| T |
48399050 |
caaagtcaccacctttaaactgtgcttcccctgaaataaggttcatccctagcccaaataagcccccaaaggttcctgctacaaatgaaagccttacccc |
48398951 |
T |
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| Q |
177 |
gagaaaaactct |
188 |
Q |
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| T |
48398950 |
aagaaaaactct |
48398939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 48383076 - 48383182
Alignment:
| Q |
77 |
caaagtcaacacctttaaactgtgcttctcctgacataaggtttaccccaagcccaaatacaccccctcaagctcctgctacaaatgaaaaccttaccac |
176 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||||||| | ||| |||||||||| |||||| || |||||||| ||| || ||| |||||||| |
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| T |
48383076 |
caaagtcaccacctttaaactgtgcttcccctgaaataaggttcatccctagcccaaataaacccccaaaatctcctgctgcaactgcaaaacttaccac |
48383175 |
T |
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| Q |
177 |
gagaaaa |
183 |
Q |
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|||||| |
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| T |
48383176 |
aagaaaa |
48383182 |
T |
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