View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_11 (Length: 667)
Name: NF11854_low_11
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Original strand, 10245393 - 10246044
Alignment:
| Q |
1 |
gagttcaagccctgtgaatggttcgaacaaagaaaaagcaaaggggagttcaagctgttccccggatgatgccagggttaaagatggtgttttaactaag |
100 |
Q |
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|||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10245393 |
gagttcaaaccctgtgagtggtccgaaaaaagaaaaagcaaaggggagttcaagctgttccccggatgatgccagggttaaagacggtgttttaactaag |
10245492 |
T |
|
| Q |
101 |
aaggtaatgaagaagagaaagacagaatctgagttggaaggaactcattgtcgccctcagaagctggcttctttgaaggtagaagataggccccagtccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10245493 |
aaggtaatgaagaagagaaagacagaatctgagttggaaggaactcattgtcgccctcagaagctggcttctttgaaggtagaagataggccccagtccg |
10245592 |
T |
|
| Q |
201 |
ttaagcagtctgcagttgttccccccaaatcaaacattcagtcaacatctctacccggtgttgagcaatcaagctagcatggtatcaactaggatgtttg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10245593 |
ttaagcagtctgcagttgttccctccaaatcaaacattcagtcaacatctctacccggtgttgagcaatcaagctagcatggtatcaactaggatgtttg |
10245692 |
T |
|
| Q |
301 |
cacaacagaatgtttgtgtatcactgttttttgttttacctgaatnnnnnnnttcagtccttccatatcagattatatcctcactgattatcatcatttt |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10245693 |
cacaacggaatgtttgtgtatcactgttttttgttttacctgaatcccccccttcagtccttccatatcagattatatcctcactgattatcatcatttt |
10245792 |
T |
|
| Q |
401 |
tgtaattagatgtccctgcaaagttcggtcaaatttagatagctgtgctcattgttagtggtccaaggtggtggtgattctctagtcagtatacaatttt |
500 |
Q |
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| T |
10245793 |
tgtaattagatgtccctgcaaagttcggtcaaatttagatagctgtgctcattgttagtgatccaaggtggtggtgattctctagtcagtatacaatttt |
10245892 |
T |
|
| Q |
501 |
gcttttatatgaaaaaagtatgctgtttggattgactcaact-cctctcccctcgatacttcaattatttagtaggagctaaaattgttttaaaaacgtt |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10245893 |
gcttttatatgaaaaaagtatgctgtttggattgactcaactccctctcccctcgatacttcaattatttagtaggagctaaaattgttttaaaaatgtt |
10245992 |
T |
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| Q |
600 |
tgtttcactctcactatcttcaaactaaacaggcctttaatagagagaaaac |
651 |
Q |
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| T |
10245993 |
tgtttccctctcactatcttcaaactaaacaggcctttaatagagagaaaac |
10246044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10245303 - 10245355
Alignment:
| Q |
1 |
gagttcaagccctgtgaatggttcgaacaaagaaaaagcaaaggggagttcaa |
53 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10245303 |
gagttcaagccctgtgaatggttcgaacaaagaaaaagcaaaggggagttcaa |
10245355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10245348 - 10245400
Alignment:
| Q |
1 |
gagttcaagccctgtgaatggttcgaacaaagaaaaagcaaaggggagttcaa |
53 |
Q |
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|||||||| ||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
10245348 |
gagttcaaaccctgtgaatggtccgaacaaagaaaaaacaaaggggagttcaa |
10245400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10245255 - 10245302
Alignment:
| Q |
1 |
gagttcaagccctgtgaatggttcgaacaaagaaaaagcaaaggggag |
48 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
10245255 |
gagttcaagccccgtgaatggtccgaacaaagaaaaagcaaaggggag |
10245302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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