View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_110 (Length: 206)
Name: NF11854_low_110
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_110 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 41414146 - 41413953
Alignment:
| Q |
1 |
tattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccat |
100 |
Q |
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| T |
41414146 |
tattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccat |
41414047 |
T |
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| Q |
101 |
tagaaatccgttctgcagggcaaagtatcacagtatttgtaaaccttttcttcactttcataattgctcaagtatttcttgctcttctctgctc |
194 |
Q |
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| T |
41414046 |
tagaaatccgttcagcagggcaaagtatcacagtatttgtaaacctttttttcactttcataattgctcaagtatttcttgctcttctctgctc |
41413953 |
T |
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Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36293673 - 36293480
Alignment:
| Q |
1 |
tattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccat |
100 |
Q |
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| T |
36293673 |
tattcaatattggttgtagttgtggtttgcctatttgttgtagcatttggatggtcgtggggcccacttggttggacagttccaagtgagatatttccat |
36293574 |
T |
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| Q |
101 |
tagaaatccgttctgcagggcaaagtatcacagtatttgtaaaccttttcttcactttcataattgctcaagtatttcttgctcttctctgctc |
194 |
Q |
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| T |
36293573 |
tagaaatccgttcagcagggcagagtatcacagtatctgtaaacctttttttcactttcgtaattgctcaggcattccttgctcttctctgctc |
36293480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 48345340 - 48345500
Alignment:
| Q |
1 |
tattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccat |
100 |
Q |
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| T |
48345340 |
tattcaatatcggttgtagttgtactttctctatttgttctagcttttggatggtcatgggggccacttggatggacagtcccaagtgagatatttccat |
48345439 |
T |
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| Q |
101 |
tagaaatccgttctgcagggcaaagtatcacagtatttgtaaaccttttcttcactttcat |
161 |
Q |
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| T |
48345440 |
tagaaatccgatcggcagggcaaagtatcacagttgcagtaaaccttctgttcactttcat |
48345500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 48332775 - 48332911
Alignment:
| Q |
31 |
ctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaagtatca |
130 |
Q |
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| T |
48332775 |
ctatttgttctagcatttggatggtcatgggggccactaggatggacagtcccaagtgagatatttccgttagaaatccgatcggcagggcaaagtataa |
48332874 |
T |
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| Q |
131 |
cagtatttgtaaaccttttcttcactttcataattgc |
167 |
Q |
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| T |
48332875 |
cagttgctgtgaaccttctcttcactttcataattgc |
48332911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 20297 - 20433
Alignment:
| Q |
31 |
ctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaagtatca |
130 |
Q |
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| T |
20297 |
ctatttgttctagcatttggatggtcatgggggccactaggatggacagtcccaagtgagatatttccgttagaaatccgatcggcagggcaaagtataa |
20396 |
T |
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| Q |
131 |
cagtatttgtaaaccttttcttcactttcataattgc |
167 |
Q |
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| T |
20397 |
cagttgctgtgaaccttctcttcactttcataattgc |
20433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 8142 - 8280
Alignment:
| Q |
26 |
tttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaag |
125 |
Q |
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| T |
8142 |
tttgtctatttgttctagcatttggatggtcatgggggccactagggtggacagtcccaagtgagatatttccattagaaatccgatcagcagggcagag |
8241 |
T |
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| Q |
126 |
tatcacagtatttgtaaaccttttcttcactttcataat |
164 |
Q |
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| T |
8242 |
tataacagttgctgtaaaccttcttttcactttcataat |
8280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 47212628 - 47212703
Alignment:
| Q |
51 |
atggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaagt |
126 |
Q |
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| T |
47212628 |
atggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagt |
47212703 |
T |
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