View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_13 (Length: 656)
Name: NF11854_low_13
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 25 - 642
Target Start/End: Original strand, 39998913 - 39999530
Alignment:
| Q |
25 |
gtcttggatccggaggtttcagatttgagtcagttatacctttgaagattggaagtgctctttaagggcaaaggtctttcctaccttatactggtgcatc |
124 |
Q |
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| T |
39998913 |
gtcttggatccggaggtttcagatttgagtcagttatacctttgaagattggaagtgctctttaagggcaaaggtctttcctaccttatactggtgcatc |
39999012 |
T |
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| Q |
125 |
ttcccctcatcctaaatttatttcaggcacattgaattagctggttgaagaataaattaattttatgtttgtaaagggcaggactggagtgcccctcacc |
224 |
Q |
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| T |
39999013 |
gtcccctcatcctaaatttatttcaggcacattgaattagctggttgaagaataaattaattttatgtttgtaaagggcaggactggagtgcccctcacc |
39999112 |
T |
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| Q |
225 |
ctagacttttttattatgaaaaaatagtagggcatgcatgctattgaggtctagcgcaaataattggtacacatggtgtatgagtgttgtaaaactcgga |
324 |
Q |
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| T |
39999113 |
ctagacttttttattatgaaaaaatagtaggacatgcatgctattgaggtctagcgcaaataattggtacacatggtgtatgagtgttgtaaaactcgga |
39999212 |
T |
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| Q |
325 |
tagcaaatttgattcttactgataaaaaagtttaggacataatttgaaactaacctttcccataaaatttaaatgaagtaatgccattgctatttgacta |
424 |
Q |
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| T |
39999213 |
tagcaaatttgattcttactgataaaaaagtttaggacataatttgaaactaatctttcccataaaatttaaatgaagtaatgccattgctatttgacta |
39999312 |
T |
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| Q |
425 |
tatggaaatatgatactataaaaggatgggatgtccttctagttcagcattcattctcccctttgaatacgaacagattttcactagtgccttgcatggt |
524 |
Q |
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| T |
39999313 |
tatggaaatatgatactataaaaggatgggatgtccttctagttcagcattcattctcccctttgaatacgaacagattttcactagtgccttgcatggt |
39999412 |
T |
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| Q |
525 |
tcttttaagtttcgttgtgacttgtcaaggaggcatcctgaggaagaacttctaccagcattcctgccctcgggccaatgacattattatggaaaaaacc |
624 |
Q |
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| T |
39999413 |
acttttaagtttcgttgtgatttgtcaaggaggcatcctggggaagaacttctaccagcattcctgccctcaggccaatgacattattatggaaaaaacc |
39999512 |
T |
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| Q |
625 |
ctacagcatgtctctgct |
642 |
Q |
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|||||| ||||||||||| |
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| T |
39999513 |
ctacagtatgtctctgct |
39999530 |
T |
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