View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_14 (Length: 652)
Name: NF11854_low_14
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 638
Target Start/End: Complemental strand, 5079874 - 5079243
Alignment:
| Q |
8 |
aagcaaaggaatgaaaggttttaatacaaattgcattagtgtggaatgaaagaaacaataacaaagacaaaagcacctcttcaagtatcaaacaaattga |
107 |
Q |
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| T |
5079874 |
aagcaaaggaatgaaaggttttaatacaaattgcattagtgtggaatgaaagaaacaataacaaagacaaaagcacctcttcaagtatcaaacaaattga |
5079775 |
T |
|
| Q |
108 |
tagagggggccttcaacacatnnnnnnntgggcgtggggtggtttgatatagtgtagtggagccaaccacaataaagctaagaataatatattttctaat |
207 |
Q |
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| T |
5079774 |
tagagggggccttcaacacatgggggggtgggcgtggggtggtttgatatagtgtagtggagccaaccacaataaagctaagaataatatattttctaat |
5079675 |
T |
|
| Q |
208 |
gtgttggttatatatattggatgaggaacat-tatatatccaatgatgaatccatctaattaattaataggtataaatgttgctnnnnnnnnnnnnctcc |
306 |
Q |
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| T |
5079674 |
gtgttggttatatatattggatgaggaacgcatatatatccaatgatgaatccatctaattaattaataggtataaatgttgctaaaaagaaaaaactcc |
5079575 |
T |
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| Q |
307 |
ctttctttcataagcaaaaaagaatgaggaatgcctccctcaaaatagactgatgggtcacgataacaacaatataaaaatattgatacatgaaatatag |
406 |
Q |
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| T |
5079574 |
ctttctttcataagcaaaaaagaatgaggaatccctccctcaaaatagactgatgggtcacgataacaacaacataaaaatattgatacatgaaatatag |
5079475 |
T |
|
| Q |
407 |
accaattatacgatgtacaagcgagacaaattttgcataatgaataagttagttattattgttggataaataaatctaaccatttcaccaaataaaatat |
506 |
Q |
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| T |
5079474 |
accaattatacgatgtacaagcgagacaaattttgcataatgaataagttagttattattgttggataaataaatctaaccatttcaccaaataaaatat |
5079375 |
T |
|
| Q |
507 |
gatgtgacgtattgattcaatgagaaaaaatttgatcaaattagatatgatgtgacctattgattcaatggtaaaaaagatatttgtgcattgtgcaaga |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5079374 |
gatgtgacgtattgattcaatgagaaaaaatttgatcaaattagatatgatgtgacctattgattcaatggtaaaaaagatatttgtgcattgtgcaaga |
5079275 |
T |
|
| Q |
607 |
acattttaattgtacatgtttgccatattttt |
638 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
5079274 |
acattttaattatacatgtttgccatattttt |
5079243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 614
Target Start/End: Complemental strand, 2016899 - 2016831
Alignment:
| Q |
546 |
attagatatgatgtgacctattgattcaatggtaaaaaagatatttgtgcattgtgcaagaacatttta |
614 |
Q |
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| T |
2016899 |
attagatatgatgtgatttattgattcaatgatgaaaaggacctttatgcatggtgcaagaacatttta |
2016831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 536
Target Start/End: Complemental strand, 37608090 - 37608050
Alignment:
| Q |
496 |
aaataaaatatgatgtgacgtattgattcaatgagaaaaaa |
536 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||| |
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| T |
37608090 |
aaataaaatatgatatgacttattgattcaatgataaaaaa |
37608050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 43931781 - 43931721
Alignment:
| Q |
475 |
aataaatctaaccatttcaccaaataaaatatgatgtgacgtattgattcaatgagaaaaa |
535 |
Q |
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||||||||| |||||| | ||||| | |||||||||||| |||||||||||||| ||||| |
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| T |
43931781 |
aataaatctcaccattaaatcaaatgatatatgatgtgacttattgattcaatgataaaaa |
43931721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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