View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_18 (Length: 616)

Name: NF11854_low_18
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_18
NF11854_low_18
[»] chr7 (4 HSPs)
chr7 (15-466)||(37050520-37050982)
chr7 (483-600)||(37051067-37051184)
chr7 (122-306)||(8689563-8689747)
chr7 (536-600)||(8688999-8689063)
[»] scaffold0015 (2 HSPs)
scaffold0015 (15-302)||(68182-68469)
scaffold0015 (535-597)||(67348-67410)
[»] chr2 (3 HSPs)
chr2 (15-301)||(41388147-41388433)
chr2 (196-307)||(1262366-1262477)
chr2 (542-602)||(41387806-41387866)
[»] chr6 (2 HSPs)
chr6 (15-301)||(59339-59625)
chr6 (536-600)||(59936-60000)
[»] chr3 (1 HSPs)
chr3 (122-302)||(43647313-43647493)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Original strand, 37050520 - 37050982
Alignment:
Q  15 catcaggtagctcataggtcttctcaacagctgagctagtcttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcat 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37050520 catcaggtagctcataggtcttctcaacagctgagctagttttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcat 37050619  T
Q  115 atcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37050620 atcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatcc 37050719  T
Q  215 aaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacctacataaaacacag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37050720 aaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacctacataaaacacag 37050819  T
Q  315 aaaatcacatcaactcatgcctagtttgcatcatcacacatggctactccttcaaatcatattcatcattcattacacaaaagtatgtagc--------- 405  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  37050820 aaaatcacatcaactcatgcctagtttgcatcat--cacatggctactccttcaaatcatattcatcattcattacacaaaagtatgtagcatcgacact 37050917  T
Q  406 ----attgaaagccgatgtctaacaacacgatgacatatgttattacattcaatgattcaattac 466  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37050918 ttggattgaaagccgatgtctaacaacacgatgacatatgttattacattcaatgattcaattac 37050982  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 483 - 600
Target Start/End: Original strand, 37051067 - 37051184
Alignment:
Q  483 actagaatagaatagaatacaatttacacatgaaacatgaaagatgaagtaatttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaat 582  Q
    |||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37051067 actagactagaatagaacacaatttacacatgcaacatcaaagatgaagtaatttaccagttgtacgaccactcgcataaagggaaagcacagcttgaat 37051166  T
Q  583 agcaacatacatagcagg 600  Q
    ||||||||||||||||||    
T  37051167 agcaacatacatagcagg 37051184  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 122 - 306
Target Start/End: Complemental strand, 8689747 - 8689563
Alignment:
Q  122 acaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatccaaacgaa 221  Q
    |||||||||||||||||||| ||||| ||||  || ||||| || || ||||||||||||||   ||| || || |||||||| || ||||| | |||||    
T  8689747 acaatttctcgctctgctgaggtggtaaaagaataaccacgttcagtcaaaatcttcatcaagaaatcggtaaggtcacgaccagccagatcaagacgaa 8689648  T
Q  222 ggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacctacata 306  Q
    |||| ||||||||||| ||||| |||||||| || || || |||||||| |||||||| ||||||||||  ||||||||| ||||    
T  8689647 ggatggcatgtggaagggcataaccctcgtagatggggacagtgtggctgacaccatcaccagaatccaacacaatacctgcata 8689563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 8689063 - 8688999
Alignment:
Q  536 ttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcagg 600  Q
    ||||| || ||||||||||| || || |||||||| || || |||||||||||||||||||||||    
T  8689063 ttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacatacatagcagg 8688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 68469 - 68182
Alignment:
Q  15 catcaggtagctcataggtcttctcaacagctgagctagtcttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcat 114  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||| |  ||||| ||||| || || |||||||||||||| || |  | ||| |||||||     
T  68469 catcaggtaactcatagctcttctcaacagctgagctcgtcttcgaggtttctaactcttgttcataatcaagagcaatgtaggatagtttttccttcac 68370  T
Q  115 atcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatcc 214  Q
     || || || ||||| ||||| ||||  |||||||||| ||| |||||||||||||| || ||||| |  || || ||||||||||||||||||||||||    
T  68369 gtctctcacgatttcacgctcggctgttgtggtgaaagagtatccacgctcggttaagattttcatgagggcgtctgtgagatcacgacctgcaagatcc 68270  T
Q  215 aaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaataccta 302  Q
    ||||| |||||||| |||||||| |||||||| || || |||||||| |||||||| |||||||| |||||||| |||||||||||||    
T  68269 aaacgcaggattgcgtgtggaagggcatatccttcatagataggaactgtgtggctgacaccatctccagaatcaagaacaataccta 68182  T

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Target: scaffold0015; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 535 - 597
Target Start/End: Complemental strand, 67410 - 67348
Alignment:
Q  535 tttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagc 597  Q
    |||||| |||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||    
T  67410 tttaccggttgtacggccactagcataaagcgaaagcacagcctgaatggcaacatacatagc 67348  T

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Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 41388433 - 41388147
Alignment:
Q  15 catcaggtagctcataggtcttctcaacagctgagctagtcttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcat 114  Q
    ||||||| ||||||||| ||||||||||||| || || || || | |||||| | ||| |||||  ||||||| |||||||||| ||  || |||||||     
T  41388433 catcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcac 41388334  T
Q  115 atcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatcc 214  Q
    ||| ||||||||||| ||||| ||||  || |||||||  || ||||||||||| |  || |||||||| ||||||||||| ||||| ||||| | |||     
T  41388333 atctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatca 41388234  T
Q  215 aaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacct 301  Q
    | ||||||||| ||||||||||| |||||||| ||||| || || || |||||||| |||||||| ||||| |||||||||||||||    
T  41388233 agacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct 41388147  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 1262366 - 1262477
Alignment:
Q  196 atcacgacctgcaagatccaaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaaca 295  Q
    |||||| || ||||||||||| ||||| |||||||| ||||| ||||| || ||||| || || || ||||| || |||||||| |||||||| || |||    
T  1262366 atcacgcccagcaagatccaaccgaagaattgcatggggaagagcatacccttcgtatatgggcactgtgtgactcacaccatcaccagaatcaagcaca 1262465  T
Q  296 atacctacataa 307  Q
    ||||||||||||    
T  1262466 atacctacataa 1262477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 41387866 - 41387806
Alignment:
Q  542 gttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcaggtg 602  Q
    ||||| |||||||| ||||| || || || || || |||||||||||||||||||||||||    
T  41387866 gttgttcgaccactggcatagagcgatagaacggcctgaatagcaacatacatagcaggtg 41387806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 59339 - 59625
Alignment:
Q  15 catcaggtagctcataggtcttctcaacagctgagctagtcttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcat 114  Q
    ||||||| | ||||||| ||||||| || || ||||| ||||| |  || || | ||| ||||| || ||||| ||||| |||||||  || ||||||||    
T  59339 catcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttcat 59438  T
Q  115 atcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatcc 214  Q
    |||||| |||||||| ||||||||||| ||||| ||||  || ||||| || || | ||| |||||||    |||||| || |||||||| || | |||     
T  59439 atccctcacaatttcacgctctgctgaggtggtaaaagaataaccacgttctgtcagaattttcatcatgtaatcagtcaggtcacgaccagccaaatca 59538  T
Q  215 aaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacct 301  Q
    | ||||||||| || ||||| || ||||| |||||||| ||||| || |||||||| |||||||| ||||||||||  |||||||||    
T  59539 agacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctgacaccatcaccagaatccaacacaatacct 59625  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 600
Target Start/End: Original strand, 59936 - 60000
Alignment:
Q  536 ttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcagg 600  Q
    ||||| |||||||||||||| || || |||||||| || || ||||| || ||||||||||||||    
T  59936 ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcagg 60000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 302
Target Start/End: Original strand, 43647313 - 43647493
Alignment:
Q  122 acaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatccaaacgaa 221  Q
    |||||||| ||||| ||||| ||||||||  |||| || | ||| || |  ||||||||||| | |||||| ||||||||||| ||||||||||||||||    
T  43647313 acaatttcccgctcggctgaggtggtgaacatgtaccctctctcagtgaggatcttcatcaaagaatcagttagatcacgaccagcaagatccaaacgaa 43647412  T
Q  222 ggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaataccta 302  Q
    |||| |||||||| |||||||| ||||| || || || || ||||| || ||||| || ||||||||||  ||||||||||    
T  43647413 ggatggcatgtgggagtgcataaccctcatagattggcacagtgtgactcacaccgtcaccagaatccaacacaataccta 43647493  T

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