View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_23 (Length: 539)
Name: NF11854_low_23
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_23 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 90943 - 91481
Alignment:
| Q |
1 |
caaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
90943 |
caaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaacacatttgatgctttagagcatgatgt |
91042 |
T |
|
| Q |
101 |
tttggaagcattctcttcaatttttcctcctatcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaataggg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
91043 |
tttggaagcattctcttcaatttttcctcctatctattccattggccccttaaatttactcttgaaagatgtgaccaatgaagaattgaactcaataggg |
91142 |
T |
|
| Q |
201 |
tccaacctttggaaagaagattcaaagtgtttgaaatggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91143 |
tccaacctttggaaagaagattcaaagtgtttgaaatggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatga |
91242 |
T |
|
| Q |
301 |
caaaagaacaaatgattgagtttgcttgggggttaggtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
91243 |
caaaagaacaaatgattgagtttgcttgggggttaagtaacagtaaaaaaccgtttttgtgggtcataaggccggatcttgtagccggtgaaaatgctgt |
91342 |
T |
|
| Q |
401 |
tctacctctagagtttttggaagagacgaaagatagaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattc |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
91343 |
tctacctctagagtttttggaagagacgaaagatagaggattgttgtcaagttggtgtctacaaggggaagtgttggctcattccgctataggaggattc |
91442 |
T |
|
| Q |
501 |
ttgacacacagtggttggaattcgacgttggagagtgtg |
539 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
91443 |
ttgacacatagtggttggaattcgacgttggagagtgtg |
91481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 36 - 538
Target Start/End: Complemental strand, 26672664 - 26672162
Alignment:
| Q |
36 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
135 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| ||||| |||||| | | |
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| T |
26672664 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26672565 |
T |
|
| Q |
136 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaagaagattcaaagtgtttgaa |
235 |
Q |
| |
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||||||||||||||| |||||||| | ||| | ||||| ||| | |||||| | ||||| ||||||||||| ||||| ||||| || |||||||| | |
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|
| T |
26672564 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacctatggaaggaagagccagagtgtttgga |
26672465 |
T |
|
| Q |
236 |
atggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatgacaaaagaacaaatgattgagtttgcttgggggtta |
335 |
Q |
| |
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||||||||| | |||||||| || | ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
26672464 |
atggctaaatagtaaagaacccaatagtgttgtttatgtcaattttggaagtatcactgttatgacaagtgaacaaatgattgagtttgcttggggacta |
26672365 |
T |
|
| Q |
336 |
ggtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgttctacctctagagtttttggaagagacgaaagata |
435 |
Q |
| |
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|||| ||||||| || ||||||||||||||||| || ||||||||| | ||||||||||||||| | ||||||||||||||||||||||| ||| ||| |
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| T |
26672364 |
agtaatagtaaaatgccctttttgtgggtcataaggccagatcttgtagctggtgaaaatgctgttttgcctctagagtttttggaagagaccaaaaata |
26672265 |
T |
|
| Q |
436 |
gaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattcttgacacacagtggttggaattcgacgttggagag |
535 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||| |||| ||||| | || ||||| || |||||||| | |||||||||||| |||||||| || |
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| T |
26672264 |
gaggtttattatcaagttggtgtccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaag |
26672165 |
T |
|
| Q |
536 |
tgt |
538 |
Q |
| |
|
||| |
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|
| T |
26672164 |
tgt |
26672162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 36 - 538
Target Start/End: Complemental strand, 26944262 - 26943760
Alignment:
| Q |
36 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| ||||| |||||| | | |
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|
| T |
26944262 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26944163 |
T |
|
| Q |
136 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaagaagattcaaagtgtttgaa |
235 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | ||||| ||| | |||||| | ||||| ||||||||||| ||||| ||||| || |||||||| | |
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|
| T |
26944162 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacctatggaaggaagagccagagtgtttgga |
26944063 |
T |
|
| Q |
236 |
atggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatgacaaaagaacaaatgattgagtttgcttgggggtta |
335 |
Q |
| |
|
||||||||| | |||||||| || | ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
26944062 |
atggctaaatagtaaagaacccaatagtgttgtttatgtcaattttggaagtatcactgttatgacaagtgaacaaatgattgagtttgcttggggacta |
26943963 |
T |
|
| Q |
336 |
ggtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgttctacctctagagtttttggaagagacgaaagata |
435 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| || ||||||||| | ||||||||||||||| | ||||||||||||||||||||||| ||| ||| |
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|
| T |
26943962 |
agtaatagtaaaatgccctttttgtgggtcataaggccagatcttgtagctggtgaaaatgctgttttgcctctagagtttttggaagagaccaaaaata |
26943863 |
T |
|
| Q |
436 |
gaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattcttgacacacagtggttggaattcgacgttggagag |
535 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||| |||| ||||| | || ||||| || |||||||| | |||||||||||| |||||||| || |
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|
| T |
26943862 |
gaggtttattatcaagttggtgtccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaag |
26943763 |
T |
|
| Q |
536 |
tgt |
538 |
Q |
| |
|
||| |
|
|
| T |
26943762 |
tgt |
26943760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 39 - 538
Target Start/End: Complemental strand, 26901953 - 26901448
Alignment:
| Q |
39 |
caaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatt------tttcctccta |
132 |
Q |
| |
|
|||||||||| |||||| || || |||||||| || ||||||||||| ||||| || | ||||| ||||||||||| || ||| || ||||| |
|
|
| T |
26901953 |
caaagagctctaaaagcttcagcaataattttaaacacatttgatgcattagaacacaacgttttagaagcattctcatccattgataatttacctccag |
26901854 |
T |
|
| Q |
133 |
tcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaagaagattcaaagtgttt |
232 |
Q |
| |
|
| | ||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||||| || || |||||||| |||||||| || || | ||||| |
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|
| T |
26901853 |
tttattcaattggtccaataaattttctcttaaaaaatgtgactgatgaagaattgaactctattggatccaacctatggaaagatgagacagattgttt |
26901754 |
T |
|
| Q |
233 |
gaaatggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatgacaaaagaacaaatgattgagtttgcttggggg |
332 |
Q |
| |
|
|||||||| | ||||||||| || | ||||||||||||||||||||| || |||||||||||||||| || ||| | |||| ||||| ||||| |
|
|
| T |
26901753 |
agaatggctagcaagcaaagaacctaatagtgttgtttatgtcaattttggaagtatcactgttatgacaaatgatcaattagttgaatttgcatgggga |
26901654 |
T |
|
| Q |
333 |
ttaggtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgttctacctctagagtttttggaagagacgaaag |
432 |
Q |
| |
|
| | ||| ||||||||| | ||||||||||| |||||||| |||||||| ||| ||||||||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
26901653 |
cttgctaatagtaaaaaaacatttttgtgggtaataagaccagatcttgtgagtggtaaaaatgctgttttacctcaagagtttttggaagagaccaaaa |
26901554 |
T |
|
| Q |
433 |
atagaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattcttgacacacagtggttggaattcgacgttgga |
532 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| || | |||||| | || ||||| || |||||||| |||||||||||||| ||||| || |
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|
| T |
26901553 |
atagaggtttattatcaagttggtgtccacaagaggaagttttaggtcattcatcaattggagggtttttgacacatagtggttggaattcaacgttaga |
26901454 |
T |
|
| Q |
533 |
gagtgt |
538 |
Q |
| |
|
||||| |
|
|
| T |
26901453 |
aagtgt |
26901448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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