View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_low_24 (Length: 511)
Name: NF11854_low_24
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_24 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] scaffold0013 (2 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 7 - 511
Target Start/End: Original strand, 5669619 - 5670123
Alignment:
| Q |
7 |
tcaatgatcacactagcatcccatgtttggctaccaaaactctgcattatagtgcatttatatacgacgatgcaataatattctagtaattaacttgcat |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669619 |
tcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattatagtgcatttatatacgacgatgcaataatattctagtaattaacttgcat |
5669718 |
T |
|
| Q |
107 |
ttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
5669719 |
ttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagtttgggagccttgcaagatgcttcttgaatgcatctcc |
5669818 |
T |
|
| Q |
207 |
atttggatcttccacccaacaggcaagcatgcacaaaacctaaaaagaattgtttattacacattaattgatgcatatggctaaagtttactgtttgatt |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5669819 |
atttggatcttccacccaacaagcaagcatgcacaaaacctaaaaagaattgtttattacacattaattgatgcatatggctaaagtttaatgtttgatt |
5669918 |
T |
|
| Q |
307 |
atatcatgatcactaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttc |
406 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5669919 |
atatcatgaccactaccttttccacacacccaatggttatgtatcgactattcttatcttcatagtggatatgtttcattgctacttggagagctttttc |
5670018 |
T |
|
| Q |
407 |
tctaaccagcttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670019 |
tctaaccagcttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatgtggatagtaa |
5670118 |
T |
|
| Q |
507 |
agatc |
511 |
Q |
| |
|
||||| |
|
|
| T |
5670119 |
agatc |
5670123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Original strand, 5721875 - 5722387
Alignment:
| Q |
9 |
aatgatcacactagcatcccatgtttggctaccaaaactctgcattata-------gtgcatt---tatatacgacgatgcaataatattctagtaatta |
98 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
5721875 |
aatgatgaaactagcatcccatgtttggctaccaaaactctgcattataaaaatatgtgcattatttatatacgatgatgcaataatattctagtaatta |
5721974 |
T |
|
| Q |
99 |
acttgcatttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5721975 |
acttgcatttagatatggtaagataatttatacatgcagggtcattccatcttcagaaatccataaatagtctgggagccttgcaagatgcttcttgaat |
5722074 |
T |
|
| Q |
199 |
gcatctccatttggatcttccacccaacaggcaagcatgcacaaaacctaaaaagaattgtttattacacattaattgatgcatatggctaaagtttact |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
5722075 |
gcatctccatttggatcttccacccaacaagcaagcatgcacaaaacctaaaaagaattgtttattacacattaatttttgcatatggctaaagtttaat |
5722174 |
T |
|
| Q |
299 |
gtttgattatatcatgatcactaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggaga |
398 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5722175 |
gtttgattatataatgatcactaccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggaga |
5722274 |
T |
|
| Q |
399 |
gctttttctctaaccagcttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtg |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
5722275 |
gctttttctctaaccagcttgtttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccataatagatcttgtatcaaaggatggg |
5722374 |
T |
|
| Q |
499 |
gatagtaaagatc |
511 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5722375 |
gatagtaaagatc |
5722387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 129 - 511
Target Start/End: Original strand, 5691617 - 5692000
Alignment:
| Q |
129 |
tacatgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacag |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5691617 |
tacatgcagggtcattccatcttcagcaacccataaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaa |
5691716 |
T |
|
| Q |
229 |
gcaagcatgcacaaaacctaaaaagaattgtttattacacattaattgatgcatatggctaaagtttactgtttgattat-atcatgatcactacctttt |
327 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||| ||||| || || || |||||||||| |
|
|
| T |
5691717 |
gaaagcatgcacaaaacctaaaaagaattgtttattacacactaattgttgcatatggctaaaaattgatgttttattattatgataataactacctttt |
5691816 |
T |
|
| Q |
328 |
ccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttgtttaatgg |
427 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
5691817 |
ccacacatccaatagttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaatcagcttgtttaacgg |
5691916 |
T |
|
| Q |
428 |
ccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5691917 |
ccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatggggatagtaaagatc |
5692000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 5690278 - 5690398
Alignment:
| Q |
9 |
aatgatcacactagcatcccatgtttggctaccaaaactctgcattata-------gtgcatttatatacgacgatgcaataatattctagtaattaact |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5690278 |
aatgatcaaactagcatcccatgtttggctaccaaaactctgcattataaaaatatgtgcatttatatacgatgatgcaataatattctagtaattaact |
5690377 |
T |
|
| Q |
102 |
tgcatttagatatggtaagat |
122 |
Q |
| |
|
|||||| ||||||| |||||| |
|
|
| T |
5690378 |
tgcattaagatatgataagat |
5690398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 320 - 508
Target Start/End: Original strand, 12137393 - 12137581
Alignment:
| Q |
320 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
419 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||| || |||| |
|
|
| T |
12137393 |
taccttttccacgcatccaatggttatgtatcgactattctcatcttcatagtggatatgcttcattgttacttgaagggctttttctctaatcaacttg |
12137492 |
T |
|
| Q |
420 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaag |
508 |
Q |
| |
|
|| || |||||| |||| | || ||| || |||||||||||||||| |||||| || |||||||||| || ||||| ||||||||||| |
|
|
| T |
12137493 |
ttgaaaggccaacgagttagaattggttcaatgaatatgtataaactatcccacataagatcttgtacaaatggatgaggatagtaaag |
12137581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 12137122 - 12137251
Alignment:
| Q |
123 |
tatatttacatgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacc |
222 |
Q |
| |
|
||||| ||| |||| ||||||||| ||||| ||||||||||| || || | | |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12137122 |
tatatatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacc |
12137221 |
T |
|
| Q |
223 |
caacaggcaagcatgcacaaaacctaaaaa |
252 |
Q |
| |
|
||||| | |||||| ||||| ||||||||| |
|
|
| T |
12137222 |
caacaagaaagcatacacaacacctaaaaa |
12137251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 12137005 - 12137039
Alignment:
| Q |
23 |
catcccatgtttggctaccaaaactctgcattata |
57 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
12137005 |
catcccatttttggctaccaaaactctgcattata |
12137039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 320 - 511
Target Start/End: Complemental strand, 164870 - 164679
Alignment:
| Q |
320 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
419 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| || |||||||| || ||||||| |||| |||||| ||| ||| ||||||||| |
|
|
| T |
164870 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagagctctttttctgaccagcttg |
164771 |
T |
|
| Q |
420 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatc |
511 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
164770 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatc |
164679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 320 - 507
Target Start/End: Complemental strand, 103910 - 103723
Alignment:
| Q |
320 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||| ||||||| |||| || ||| ||| ||| ||||||||| |
|
|
| T |
103910 |
taccttttccacacacccaatggttaggtatcgactgttctcatcctcgtagtggatatgcttcattgtaacttcaagggctctttttctgaccagcttg |
103811 |
T |
|
| Q |
420 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaa |
507 |
Q |
| |
|
|| || ||||| |||| | ||| ||||| | ||||||||||| | ||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
103810 |
ttgaaaggccagcgagtgagaagcggctcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaa |
103723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 165112 - 164998
Alignment:
| Q |
133 |
tgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaggcaa |
232 |
Q |
| |
|
|||| ||||||||||||||| || | ||| || || ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
165112 |
tgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagcaa |
165013 |
T |
|
| Q |
233 |
gcatgcacaaaacct |
247 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
165012 |
gcatacataaaacct |
164998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 104145 - 104032
Alignment:
| Q |
123 |
tatatttacatgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacc |
222 |
Q |
| |
|
||||| ||| |||| ||||||||||||||| || | ||| || || ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
104145 |
tatatatacctgcatggtcattccatcttctgacatccacaagtaatcttggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacc |
104046 |
T |
|
| Q |
223 |
caacaggcaagcat |
236 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
104045 |
caacaagcaagcat |
104032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 320 - 511
Target Start/End: Complemental strand, 13052813 - 13052622
Alignment:
| Q |
320 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
419 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||||||||||||||| || ||||||||||| |||||| |||||| || ||||||||||||| || ||| |
|
|
| T |
13052813 |
taccttttctacagcccccatggttatgtatcgactattctcatcctcgtagtggatatgcttcattcttacttgaagggctttttctctaatcaatttg |
13052714 |
T |
|
| Q |
420 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatc |
511 |
Q |
| |
|
|| || |||||| |||| | ||||||||| ||||||| || || | ||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
13052713 |
ttgaaaggccaacgagtgagaagtggctcggtgaatatatagaagctatcccatatcagatcttgtatcaaaggatgaggatagtaaagatc |
13052622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 13053025 - 13052922
Alignment:
| Q |
133 |
tgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaggcaa |
232 |
Q |
| |
|
|||| ||||||||||||||| |||||||| || || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13053025 |
tgcatggtcattccatcttctgaaacccacaagtaatctgggacccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaa |
13052926 |
T |
|
| Q |
233 |
gcat |
236 |
Q |
| |
|
|||| |
|
|
| T |
13052925 |
gcat |
13052922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 320 - 505
Target Start/End: Original strand, 92398 - 92583
Alignment:
| Q |
320 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
419 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| || ||||| ||||| |||||||||||||| || ||||||||||| |||| |||| |
|
|
| T |
92398 |
taccttttccacacatgcaacagttatgtatcgactattctcatcctcgtagtgaatatgcttcattgctacttgtagggctttttctctgaccaacttg |
92497 |
T |
|
| Q |
420 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaaccatcccatattagatcttgtatcaaaggatgtggatagta |
505 |
Q |
| |
|
|| || |||||| |||| | ||||||||| | || | ||| || | ||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
92498 |
ttgaaaggccaacgagttagaagtggctcagtaaaaaggtaaaagctatcccatattaaatcttgtatcaaaggatgaggatagta |
92583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 92132 - 92235
Alignment:
| Q |
133 |
tgcagggtcattccatcttcagaaacccataaatagtctaggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaggcaa |
232 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| || ||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
92132 |
tgcatggtcattccatcttcggaaatccataaataatcggggacccttgcaagatgttttttgaaagcatctccatttggatcttcaacccaacaggcaa |
92231 |
T |
|
| Q |
233 |
gcat |
236 |
Q |
| |
|
|||| |
|
|
| T |
92232 |
gcat |
92235 |
T |
|
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