View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_25 (Length: 507)
Name: NF11854_low_25
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 196 - 430
Target Start/End: Original strand, 22807964 - 22808198
Alignment:
| Q |
196 |
caacaaaaggtccaatccatttggaccgaagcttacctgccatgatttttaaacgagagttaaacaataaaactttttggccaattgagaactccttcct |
295 |
Q |
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| T |
22807964 |
caacaaaaggtccaatccatttggaccgaagcttacctgccatgatttttaaacgagagttaaacaataaaattttctggccaattgagaagtccttctt |
22808063 |
T |
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| Q |
296 |
agaaatcattttatcacggaagtattttgttttctctttataaatccgagagttctcataagcctctaacctgagctcctcaagttggtgtagttggagc |
395 |
Q |
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| T |
22808064 |
agaaatcattttatcatggaagtgttttgttttctctttataaatccgagagttctcataagcctttaacctgagctcctcaagttgttgtagttggagc |
22808163 |
T |
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| Q |
396 |
ttcctctctatgcttgctgtctgcatctcaagatt |
430 |
Q |
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| T |
22808164 |
ttcctctctatgcctgctgtctgcatctcaagatt |
22808198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 22807815 - 22807967
Alignment:
| Q |
17 |
gagctaaggggtagctgctgaagggtatgaaggctcctccaaggagagctcttcaacaatttcttcttcaggcatcagactttgatagaaaagcttcagc |
116 |
Q |
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| T |
22807815 |
gagctaaggggtagctgctggagggtatgaaggctcctccaaggagagctcttcaacaatttcttcttcaggcatcagactttcatggaacagcttcatc |
22807914 |
T |
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| Q |
117 |
cgctgtccctttactttgaacactttgtcggtacctgcacttttaacctcaac |
169 |
Q |
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| T |
22807915 |
cgctgactgtttactttgaacactttgtcggtacctgcacttttaatctcaac |
22807967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 30742420 - 30742473
Alignment:
| Q |
441 |
ctcgaaattaattatttaaaataacgtatggaataaaacgcaattattggactc |
494 |
Q |
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| T |
30742420 |
ctcgaaattaattatttaaaataacgtctggaacaaaatgcgattatttgactc |
30742473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 19800480 - 19800442
Alignment:
| Q |
441 |
ctcgaaattaattatttaaaataacgtatggaataaaac |
479 |
Q |
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| T |
19800480 |
ctcgaaattaattatttaaaataacgtctggaacaaaac |
19800442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 30142285 - 30142236
Alignment:
| Q |
445 |
aaattaattatttaaaataacgtatggaataaaacgcaattattggactc |
494 |
Q |
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| T |
30142285 |
aaattaattatttaaaataatgtctggaacaaaacgcgattatttgactc |
30142236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 22303263 - 22303214
Alignment:
| Q |
445 |
aaattaattatttaaaataacgtatggaataaaacgcaattattggactc |
494 |
Q |
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| T |
22303263 |
aaattaattattcaaaataacgtctggaacaaaacgcgattatttgactc |
22303214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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