View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_26 (Length: 496)

Name: NF11854_low_26
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_26
NF11854_low_26
[»] chr4 (6 HSPs)
chr4 (189-341)||(7651806-7651958)
chr4 (192-343)||(9375516-9375663)
chr4 (37-119)||(7651662-7651740)
chr4 (291-326)||(1935795-1935830)
chr4 (291-341)||(25231891-25231941)
chr4 (139-171)||(7651758-7651790)
[»] chr5 (3 HSPs)
chr5 (29-342)||(3756065-3756388)
chr5 (29-341)||(14638930-14639240)
chr5 (191-313)||(6273872-6273994)
[»] chr1 (4 HSPs)
chr1 (189-313)||(24983732-24983855)
chr1 (195-298)||(3356250-3356353)
chr1 (191-305)||(961636-961750)
chr1 (135-171)||(24983873-24983909)
[»] chr6 (3 HSPs)
chr6 (191-342)||(21293308-21293449)
chr6 (196-323)||(20392047-20392175)
chr6 (232-310)||(24431452-24431530)
[»] chr3 (4 HSPs)
chr3 (190-343)||(29029087-29029230)
chr3 (191-341)||(51609873-51610022)
chr3 (191-341)||(44201830-44201980)
chr3 (253-313)||(42908641-42908701)
[»] chr8 (2 HSPs)
chr8 (291-342)||(39375924-39375975)
chr8 (255-313)||(597902-597960)
[»] chr7 (1 HSPs)
chr7 (255-305)||(46171440-46171490)
[»] scaffold0155 (1 HSPs)
scaffold0155 (275-340)||(33317-33382)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 189 - 341
Target Start/End: Original strand, 7651806 - 7651958
Alignment:
Q  189 ttgaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcct 288  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7651806 ttgaaccggtctgacccacgactcggccgagtcaccggtttttaccggttttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcct 7651905  T
Q  289 acccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatg 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7651906 acccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatg 7651958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 192 - 343
Target Start/End: Original strand, 9375516 - 9375663
Alignment:
Q  192 aaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctacc 291  Q
    ||||| ||| |||| |||||||||||||||||||||||||| || | |||||||||||| |||||||||||||||| ||| || ||||||||||| ||||    
T  9375516 aaccgatcttacccgcgactcggccgagtcaccggttttgatcgattttgaccgagttaactgcatggccgatccatatgttgactcgaaccggcttacc 9375615  T
Q  292 caccggttcacggtccgaccggccggtccgagccgagtctgaaaactatgca 343  Q
    ||||||||||| || |||    |||||||||||||||| | |||||||||||    
T  9375616 caccggttcacagttcga----ccggtccgagccgagtttcaaaactatgca 9375663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 7651662 - 7651740
Alignment:
Q  37 cttctcttctctctgtacgactgaaaactaaaaacagagta-tgagtttcgttcgttttagcttctctgacccttctaattccg 119  Q
    |||||||||||||||||||  |||||||||||||||||||| |||| ||  | ||||||||||  |||||||||||||||||||    
T  7651662 cttctcttctctctgtacg--tgaaaactaaaaacagagtactgaggtt-ttacgttttagct--tctgacccttctaattccg 7651740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 326
Target Start/End: Complemental strand, 1935830 - 1935795
Alignment:
Q  291 ccaccggttcacggtccgaccggccggtccgagccg 326  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1935830 ccaccggttcacggtccaaccggccggtccgagccg 1935795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 25231941 - 25231891
Alignment:
Q  291 ccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatg 341  Q
    ||||||||||||||||| ||||| |||||||||||| || | |||||||||    
T  25231941 ccaccggttcacggtccaaccggtcggtccgagccgggtttcaaaactatg 25231891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 7651758 - 7651790
Alignment:
Q  139 taacaaatccaaaacgacgtcgttttggtaagc 171  Q
    ||||||||| |||||||||||||||||||||||    
T  7651758 taacaaatctaaaacgacgtcgttttggtaagc 7651790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 342
Target Start/End: Original strand, 3756065 - 3756388
Alignment:
Q  29 cgttttagcttctcttctctctgtacgactgaaaactaaaaacagagtatgagtttcgttcgttttagcttctctgacccttctaattccgnnnnnnnnn 128  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||| ||   ||||||||||||||||||||||||||||||||             
T  3756065 cgttttagcttctcttctctctgtacg--tgaaaactaagaacagagtatgaggtt---tcgttttagcttctctgacccttctaattccgttttttttt 3756159  T
Q  129 nnnnnn--caactaacaaatccaaaacgacgtcgttttggtaagc----nnnnnnnnnnnnnnnnnttgaaccggtctgacccacgactcggccgagtca 222  Q
            ||| |||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||||||||||||    
T  3756160 ttttttttcaattaacaaatccaaaacgacgtcgttttggtaagcaaaaaaaaaaaaaaaaaaaaattgaaccggtctgacccacgactcggccgagtca 3756259  T
Q  223 ccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctacccaccggttca---------cggtccgaccgg 313  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||    
T  3756260 ccggttttggccggttttgaccgggttatctgcatggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgaccggtccgaccgg 3756359  T
Q  314 ccggtccgagccgagtctgaaaactatgc 342  Q
    |||||||||||||||||||||||||||||    
T  3756360 ccggtccgagccgagtctgaaaactatgc 3756388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 14638930 - 14639240
Alignment:
Q  29 cgttttagcttctcttctctctgtacgactgaaaactaaaaacagagtatgagtttcgttcgttttagcttctctgacccttctaattccgnnnnnnnnn 128  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||| ||   ||||||||| ||||||||||||||||||||||             
T  14638930 cgttttagcttctcttctctctgtacg--tgaaaactaagaacagagtatgaggtt---tcgttttagtttctctgacccttctaattccggtttttttt 14639024  T
Q  129 nnnnnn--caactaacaaatccaaaacgacgtcgttttggtaagcnnnnnnnnnnnnnnnnn--ttgaaccggtctgacccacgactcggccgagtcacc 224  Q
            ||| |||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||    
T  14639025 ttttttttcaattaacaaatccaaaacgacgtcgttttggtaagcaaaaaaaaaaaaaaaaaaattgaaccggtctgacccacgactcggccgagtcacc 14639124  T
Q  225 ggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctacccaccggttca---------cggtccgaccggcc 315  Q
    ||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  14639125 ggttttgaccgg----------gttatctgcatggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgaccggtccgaccggcc 14639214  T
Q  316 ggtccgagccgagtctgaaaactatg 341  Q
    ||||||||||||||||||||||||||    
T  14639215 ggtccgagccgagtctgaaaactatg 14639240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 6273872 - 6273994
Alignment:
Q  191 gaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctac 290  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||  |  ||||| ||  | ||||||||||||||| |   ||||||||||||||||    
T  6273872 gaaccggtccgaccaactactcggccgagtcaccggttttgaccggttctcgccgagctaattacatggccgatccaaaggccagctcgaaccggcctac 6273971  T
Q  291 ccaccggttcacggtccgaccgg 313  Q
    ||||||||||||||| |||||||    
T  6273972 ccaccggttcacggttcgaccgg 6273994  T

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Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 24983855 - 24983732
Alignment:
Q  189 ttgaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcct 288  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24983855 ttgaaccggtctgacc-acgactcggccgagtcaccggtttttaccggttttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcct 24983757  T
Q  289 acccaccggttcacggtccgaccgg 313  Q
    |||||||||||||||||||||||||    
T  24983756 acccaccggttcacggtccgaccgg 24983732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 3356250 - 3356353
Alignment:
Q  195 cggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctacccac 294  Q
    |||||||||||||||||||||||||||||||||||| || | | |||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||    
T  3356250 cggtctgacccacgactcggccgagtcaccggtttttactgattttgaccgagttaactgcatagccgatccaaatgttggctcgaaccggcttacccac 3356349  T
Q  295 cggt 298  Q
    ||||    
T  3356350 cggt 3356353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 961750 - 961636
Alignment:
Q  191 gaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatga-tggctcgaaccggccta 289  Q
    |||||||||| ||| |  |||||||||||||||||||||||||||||  |  ||||| ||  |||||| | ||||| ||||| | |||||||||||||||    
T  961750 gaaccggtctaaccaaaaactcggccgagtcaccggttttgaccggttctcgccgagctaattgcatgactgatcc-aatgacttgctcgaaccggccta 961652  T
Q  290 cccaccggttcacggt 305  Q
    ||||||||||| ||||    
T  961651 cccaccggttctcggt 961636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 24983909 - 24983873
Alignment:
Q  135 caactaacaaatccaaaacgacgtcgttttggtaagc 171  Q
    ||||||||||||||||||||||||||||||||| |||    
T  24983909 caactaacaaatccaaaacgacgtcgttttggtgagc 24983873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 191 - 342
Target Start/End: Original strand, 21293308 - 21293449
Alignment:
Q  191 gaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctac 290  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  21293308 gaaccggtctgacccacgactcggccgagtcaccggttttga----------ccgagttatttgcatggccgatccaaatgatggctcaaaccggcctac 21293397  T
Q  291 ccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatgc 342  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21293398 ccaccggttcatggtccgaccggccggtccgagccgagtctgaaaactatgc 21293449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 196 - 323
Target Start/End: Complemental strand, 20392175 - 20392047
Alignment:
Q  196 ggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctacccacc 295  Q
    |||||||||||||||||||||| |||||||||||| | |||| |||||||||||| |||||||||||||||||||| | |||| |||  || ||||||||    
T  20392175 ggtctgacccacgactcggccgtgtcaccggtttttatcggttttgaccgagttaactgcatggccgatccaaatgttagctcaaactagcttacccacc 20392076  T
Q  296 ggttcacggtccgaccgg-ccggtccgag 323  Q
     ||||||||||| ||||| ||||||||||    
T  20392075 agttcacggtccaaccggtccggtccgag 20392047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 24431452 - 24431530
Alignment:
Q  232 accggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgac 310  Q
    |||||| |||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||    
T  24431452 accggttttgaccgagttaactgcatggccgatgcaaatgttggctcgaaccggcttacccactggttcacggtccgac 24431530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 29029087 - 29029230
Alignment:
Q  190 tgaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggccta 289  Q
    ||||||||||||||||| |||||||||||||||||||||||||          ||||||||||||||||||||||||||| | |||||||||||||||||    
T  29029087 tgaaccggtctgacccatgactcggccgagtcaccggttttga----------ccgagttatctgcatggccgatccaaaggttggctcgaaccggccta 29029176  T
Q  290 cccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatgca 343  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  29029177 cccatcggttcacggtccgaccggccggtccgagccgagtttcaaaactatgca 29029230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 341
Target Start/End: Original strand, 51609873 - 51610022
Alignment:
Q  191 gaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctac 290  Q
    |||||| |||||||||||||||||||||||||||||||||||          |||||||| |||||| ||||||||||||| |||||||||||||| |||    
T  51609873 gaaccgatctgacccacgactcggccgagtcaccggttttga----------ccgagttaactgcatagccgatccaaatgttggctcgaaccggcttac 51609962  T
Q  291 ccaccggttca---------cggtccgaccggccggtccgagccgagtctgaaaactatg 341  Q
    ||| |||||||         |||||||||||| ||||||||||||||| | |||||||||    
T  51609963 ccatcggttcacggttcaaccggtccgaccggtcggtccgagccgagtttcaaaactatg 51610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 341
Target Start/End: Original strand, 44201830 - 44201980
Alignment:
Q  191 gaaccggtctgacccacgactcggccgagtcaccggttttgaccggtcttgaccgagttatctgcatggccgatccaaatgatggctcgaaccggcctac 290  Q
    ||||||||  ||||||  |||||||||||||||||  ||||||||||  |  |||| | | ||||||||||||||| || |   ||||||| ||| ||||    
T  44201830 gaaccggttcgacccataactcggccgagtcaccgagtttgaccggttctcgccgactcagctgcatggccgatccgaaggtatgctcgaaacggtctac 44201929  T
Q  291 ccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatg 341  Q
    |||||||||| |||| | |||||| ||| |||||||||| | |||||||||    
T  44201930 ccaccggttctcggttcaaccggctggttcgagccgagtttcaaaactatg 44201980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 42908641 - 42908701
Alignment:
Q  253 tgcatggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgaccgg 313  Q
    |||||||||||||  | | | |||||||||| || ||||||||||||||||||| ||||||    
T  42908641 tgcatggccgatctgacttaaggctcgaaccagcatacccaccggttcacggtcggaccgg 42908701  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 39375924 - 39375975
Alignment:
Q  291 ccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactatgc 342  Q
    |||||||||||||||| |||||||| ||| ||||||||| ||||||||||||    
T  39375924 ccaccggttcacggtcggaccggccagtctgagccgagtttgaaaactatgc 39375975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 597902 - 597960
Alignment:
Q  255 catggccgatccaaatgatggctcgaaccggcctacccaccggttcacggtccgaccgg 313  Q
    ||||||||||| || | | ||||||||||||| ||||||||||||||||| | ||||||    
T  597902 catggccgatctaacttaaggctcgaaccggcatacccaccggttcacggccggaccgg 597960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 46171440 - 46171490
Alignment:
Q  255 catggccgatccaaatgatggctcgaaccggcctacccaccggttcacggt 305  Q
    ||||||||||||||| |   |||||||||||||||||||||||||||||||    
T  46171440 catggccgatccaaaggccagctcgaaccggcctacccaccggttcacggt 46171490  T

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Target: scaffold0155 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 33382 - 33317
Alignment:
Q  275 gctcgaaccggcctacccaccggttcacggtccgaccggccggtccgagccgagtctgaaaactat 340  Q
    ||||||||||  ||| |||||||||| ||||||||||||| ||| |||||||||| | ||||||||    
T  33382 gctcgaaccgttctatccaccggttcccggtccgaccggctggttcgagccgagtttcaaaactat 33317  T

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