View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_low_28 (Length: 468)
Name: NF11854_low_28
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 44200349 - 44199890
Alignment:
| Q |
1 |
caagccaccaagacctaagaaatacaatgtgtctataattacataataatgtgaataacaacatacaaaggacaaggtgtagcaagcatacctgcatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200349 |
caagccaccaagacctaagaaatacaatgtgtctataattacataataatgtgaataacaacatacaaaggacaaggtgtagcaagcatacctgcatggc |
44200250 |
T |
|
| Q |
101 |
taatgataagagaagcagatctgatatgatcagcaatactggaagaaaaagtgaagtaatctacagccaatgtacaatctccttcggactacattaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200249 |
taatgataagagaagcagatctgatatgatcagcaatactggaagaaaaagtgaagtaatctacagccaatgtacaatctccttcggactacattaaaaa |
44200150 |
T |
|
| Q |
201 |
gttaacaaaaaccaactcagtacaaaccgaagtatcttctatataagaggatacttttccccatatgtcatctactaaagtaaatgtaatgtagcaccga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200149 |
gttaacaaaaaccaactcagtacaaaccgaagtatcttctatataagaggatacttttccccatatgtcatctactaaagtaaatgtaatgtagcaccga |
44200050 |
T |
|
| Q |
301 |
cacttcaaattgaaata------tatgtccgatattaacacaacatcaacaaatatgattacattcgattggttcattttctcaaattattaccgatatc |
394 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44200049 |
cacttcagattgaaatagtgtctgatgtccgatactaacacaacatcaacaaatatgattacattcgattggttcattttctcaaattattaccgatatc |
44199950 |
T |
|
| Q |
395 |
aaagtgtaagtgactaagtgtcatgtctggtgaggtgcttcgtagtaatacaattatgtg |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44199949 |
aaagtgtaagtgactaagtgtcatgtctggtgaggtgcttcgtagtaatacaattatgtg |
44199890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 53791601 - 53791481
Alignment:
| Q |
84 |
aagcatacctgcatggctaatgataagagaagcagatctgatatgatcagcaatactggaagaaaaagtgaagtaatctacagccaatgtacaatctcct |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||| || |||||||||| || |||||| |
|
|
| T |
53791601 |
aagcatacctgcatggctaatgacaagagaggcagatctgagatgatctgcaatactggaagaaaaagtgaagtagtcaacagccaatgaaccttctcct |
53791502 |
T |
|
| Q |
184 |
tcggactacattaaaaagtta |
204 |
Q |
| |
|
|| |||| || |||||||||| |
|
|
| T |
53791501 |
tcagactgcaataaaaagtta |
53791481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 47542597 - 47542541
Alignment:
| Q |
332 |
acacaacatcaacaaatatgattacattcgattggttcattttctcaaattattacc |
388 |
Q |
| |
|
|||||||| | ||| || ||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
47542597 |
acacaacaccgacacatgtgattacattcaaatagttcattttctcaaattattacc |
47542541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 31277039 - 31277075
Alignment:
| Q |
350 |
tgattacattcgattggttcattttctcaaattatta |
386 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
31277039 |
tgattacattcaattagttcattttctcaaattatta |
31277075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University