View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_29 (Length: 465)
Name: NF11854_low_29
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 1866901 - 1866465
Alignment:
| Q |
11 |
cacagatccatgttgatgctgttgttcttcatcatcaaaattcctatcattttgttgagttgttgatgatggttgtgcccgtaagctgcttcttcttctt |
110 |
Q |
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| T |
1866901 |
cacagatccatgttgatgctgttgttcttcatcatcaaaattcctatcattttgttgagttgttgatgatggttgtgcccgtaagctgcttcttcttctt |
1866802 |
T |
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| Q |
111 |
cttgacctgaaactgatgtaaattgcacgaatacaaacaagnnnnnnngcaaaagcaagaagagaaagcgtgaggatgaagtaattgttgattttgtggt |
210 |
Q |
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| T |
1866801 |
cttgacctgaaactgacgtaaattgcacgaatacaaacaagaaaaaaagcaaaagcaagaagagaaagcgtgaggatgaagtaattgttgattttgtggt |
1866702 |
T |
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| Q |
211 |
gatcttgttgtggtggtggtggtgatggaggatagtaataagggatttgtggactggttatacagaaattgaagcaagcagtgcaatttttgcctgatga |
310 |
Q |
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| T |
1866701 |
gatcttgttgtggtggtggtggtgatggaggatagtaataagggatttttggactggttatacagaaattgaagcaagcagtgcaatttttgcctgatga |
1866602 |
T |
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| Q |
311 |
acaatttgtgtgacatattgtttcacataattttgccatcattttcctatgatgcaattgcaaccccatattattatcattacaattcaattcaattcag |
410 |
Q |
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| T |
1866601 |
acaatttgtgtgacatattgtttcacataattttgccatcaatttcctatgatgcaattgcaaccccatattattatcattacaattcaattcaattcag |
1866502 |
T |
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| Q |
411 |
attttgatcaaagttgaattgaagatgatgatgaagt |
447 |
Q |
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| T |
1866501 |
attttgatcaaagttgaattgaagatgatgatgaagt |
1866465 |
T |
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