View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_3 (Length: 911)
Name: NF11854_low_3
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 654
Target Start/End: Original strand, 38569325 - 38569966
Alignment:
| Q |
13 |
gagacaagaaagcatgagtttcgaagatgttcggtttgcggtgttgtgaattattgttcacgcgcttgtcaagcgcttgattggaagtttcgacataagg |
112 |
Q |
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| T |
38569325 |
gagacaagaaagcatgagtttcgaagatgttcggtttgcggtgttgtgaattattgttcacgcgcttgtcaagcgcttgattggaagtttcgacataagg |
38569424 |
T |
|
| Q |
113 |
cggagtgtgcaccggtggagaggtggttagaggaggaggaacatgttgccggggaaggtgacggtggcgttaacgttgatgaggtggttgtgcttgatag |
212 |
Q |
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| T |
38569425 |
cggagtgtgcaccggtggagaggtggttagaggaggaggaacatattgccggggaaggtgacggtggcgttaacgttgatgaggtggttgtgcttgatag |
38569524 |
T |
|
| Q |
213 |
ttgataggtttagattgtttttccaaacgttaacgatgacggtaacggaagattgttttggaactgtattttttggcattggatactgaaacatggaaaa |
312 |
Q |
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| T |
38569525 |
ttgataggtttagattgtttatccaaacgttaacgatgacagtaacggaagattgttttggaactgtattttttggcattggatactgaaacatggaaaa |
38569624 |
T |
|
| Q |
313 |
agttaaaatattaatggtctcatttattactgtggcgttgcataatgcaaagtccaatggtagtgtggtctcctctgttcctttaccaacagtacnnnnn |
412 |
Q |
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| T |
38569625 |
agttaaaatattaattgtctcatttattactgtggcgttgcataatgcaaagtccaatggtagtttggtctcctctgttcctttaccaacagtacttttt |
38569724 |
T |
|
| Q |
413 |
nnnnnnnnnnnnnnnnnnnnctatttattgccctaaagtaacgtgacttactaattttggtttgttggaaaaaagaagttatattaggtaaaataaattt |
512 |
Q |
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| T |
38569725 |
tgagtttttttctttattttctatttattgccctaaagtaacttgactagttaattttggtttggtggaaaaaagaagttactttaggtaaaataaattt |
38569824 |
T |
|
| Q |
513 |
ttgaaacatgttagtttaggtaattaaaatgtcaacttattactattaggttcataattttggcatcaaatttctgccaaaaagtttttcccatcaattt |
612 |
Q |
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| T |
38569825 |
ttgaaacatgttagtttaggtaattaaaatgtcaacttattactattaggttcataattttggcatcaaatttctgccaaaatgtttttcccatcaattt |
38569924 |
T |
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| Q |
613 |
tgttagtacagtactttgaaattttagtcaaaacaaatttat |
654 |
Q |
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| T |
38569925 |
tgttagtacagtactttgaaattttagtcaaaacaaatttat |
38569966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 694 - 893
Target Start/End: Original strand, 38570066 - 38570265
Alignment:
| Q |
694 |
aagttacagcgattgaaaggtttgggctagttttattttatttttggttgctaattaaaacatttaaaccaaaatttgttgtaaattgcctagtttgaga |
793 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38570066 |
aagttacatcgatccaaaggtttgggctagttttattttatttttggttgctaattaaaacatttaaaccaaaatttgttgtaaattgcctagtttgaga |
38570165 |
T |
|
| Q |
794 |
tacatatatagaaattcagactgacataaaggatatgacgtgtgctgggtatatatgtaggcaccacaatgttacaaacaaaattaatgaaagattgaat |
893 |
Q |
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| T |
38570166 |
tacatatatagaaattcagactgacataaaggatatgacgtgtgctgggtatatatgtaggcaccacaatgttacaaacaaaattaatgaaagattgaat |
38570265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 34683331 - 34683204
Alignment:
| Q |
22 |
aagcatgagtttcgaagatgttcggtttgcggtgttgtgaattattgttcacgcgcttgtcaagcgcttgattggaagtttcgacataaggcggagtgtg |
121 |
Q |
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| T |
34683331 |
aagcatgagtttcgaaggtgttcggtttgtggtgcggttaattattgctcacgtgcttgtcaagcgcttgattggaagtttcgtcataaggctgagtgtg |
34683232 |
T |
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| Q |
122 |
caccggtggagaggtggttagaggagga |
149 |
Q |
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| T |
34683231 |
ctccggtggaacggtggcttgaggagga |
34683204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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