View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_30 (Length: 463)
Name: NF11854_low_30
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Original strand, 54531231 - 54531665
Alignment:
| Q |
15 |
ggtgatacactaataccgataatttaagatataaactcgataaaacgagcaaagaactcaataaacacacccttttgcagtcccaacagcaatcttcatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54531231 |
ggtgatacactaataccgataatttaagatataaactcgataaaacaagcaaagaactcaataaacacacccttttgcagtcccaacagcaatcttcatt |
54531330 |
T |
|
| Q |
115 |
cgtatatcccaagtcaaagggctaacaggtcctacatcaccatgcagccactgctctaaatttccattgtcaacatattcgtaaacaagcatcctgtata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54531331 |
cgtatatcccaagtcaaagggctaacaggtcctacatcaccatgcagccactgctctaaatttccattgtcaacatattcgtaaacaagcatcctgtata |
54531430 |
T |
|
| Q |
215 |
gtcagcaaaatcgctttagacaaaatttataggaagtttcttcatttgaaaaaccttgaatcaaaagaataacagtcatgtaataaacataatacttacc |
314 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54531431 |
gtcagcgaaatcgctttagacaaaatttataggaagtttcttcatttgaaaaaccttgaatcaaaagaataacagtcatgtaataaacataatacttacc |
54531530 |
T |
|
| Q |
315 |
ttttagcaccttctgcacaatatccaactaacccaaccaaattcttatgcctcacttttccaattgcttcaacttccactttaaactctttctctgcttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54531531 |
ttttagcaccttctgcacaatatccaactaacccaaccaaattcttatgcctcacttttccaatggcttcaacttccactttaaactctttctctgcttg |
54531630 |
T |
|
| Q |
415 |
acccctaattagtacagtaatgcacatgaattttc |
449 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
54531631 |
acccctaattagtacagtaatgcacatgaattttc |
54531665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 210
Target Start/End: Original strand, 26325967 - 26326098
Alignment:
| Q |
79 |
acacacccttttgcagtcccaacagcaatcttcattcgtatatcccaagtcaaagggctaacaggtcctacatcaccatgcagccactgctctaaatttc |
178 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||| || ||||||| |||||||||||| ||||| ||||||| |
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| T |
26325967 |
acacacccttttgcagtcccaatggcaatcttcattcgaatatcccatgtcaaggggctagttggccctacattaccatgcagccattgctccaaatttc |
26326066 |
T |
|
| Q |
179 |
cattgtcaacatattcgtaaacaagcatcctg |
210 |
Q |
| |
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| || ||||||||||| ||||||||||||||| |
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| T |
26326067 |
cgttctcaacatattcataaacaagcatcctg |
26326098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 319 - 421
Target Start/End: Original strand, 26326209 - 26326311
Alignment:
| Q |
319 |
agcaccttctgcacaatatccaactaacccaaccaaattcttatgcctcacttttccaattgcttcaacttccactttaaactctttctctgcttgaccc |
418 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||| ||||||||| |
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| T |
26326209 |
agcaccttctgcacaatatcctactaatcgaactaaattcttatgccttactttgccaatggcttcaacctccaccttaaactctttctcagcttgaccc |
26326308 |
T |
|
| Q |
419 |
cta |
421 |
Q |
| |
|
||| |
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|
| T |
26326309 |
cta |
26326311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 29789353 - 29789454
Alignment:
| Q |
109 |
ttcattcgtatatcccaagtcaaagggctaacaggtcctacatcaccatgcagccactgctctaaatttccattgtcaacatattcgtaaacaagcatcc |
208 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| |||||||| ||||| ||||||| |||||| |||| ||| |||||||| |||||||| || |||||||||| |
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| T |
29789353 |
ttcatgcgtatttcccacgtcaaagggcttacaggtccaacatccccatgcaaccactgttctagattgccattgtccacatattcatacacaagcatcc |
29789452 |
T |
|
| Q |
209 |
tg |
210 |
Q |
| |
|
|| |
|
|
| T |
29789453 |
tg |
29789454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 45859756 - 45859713
Alignment:
| Q |
374 |
ccaattgcttcaacttccactttaaactctttctctgcttgacc |
417 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
45859756 |
ccaatagcttcaacttccactctaaattctttctctgcttgacc |
45859713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 11037097 - 11036994
Alignment:
| Q |
109 |
ttcattcgtatatcccaagtcaaagggctaacaggtcctacatcaccatgcagccactgctctaaatttccattgtcaacatattcgtaaacaagcatcc |
208 |
Q |
| |
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||||| || |||||||| |||| |||||| |||||||| ||||| |||||||||||||| |||| ||| ||||| |||||| | || || |||||||||| |
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| T |
11037097 |
ttcatccggatatcccatgtcatagggcttacaggtccaacatctccatgcagccactggtctagattgccattatcaacaaactcatacacaagcatcc |
11036998 |
T |
|
| Q |
209 |
tgta |
212 |
Q |
| |
|
|||| |
|
|
| T |
11036997 |
tgta |
11036994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 20217301 - 20217256
Alignment:
| Q |
154 |
ccatgcagccactgctctaaatttccattgtcaacatattcgtaaa |
199 |
Q |
| |
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||||| ||||| ||||||||||||||||||| |||||| ||||||| |
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|
| T |
20217301 |
ccatgaagccattgctctaaatttccattgttaacatactcgtaaa |
20217256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 6209455 - 6209375
Alignment:
| Q |
109 |
ttcattcgtatatcccaagtcaaagggctaacaggtcctacatcaccatgcagccactgctctaaatttccattgtcaaca |
189 |
Q |
| |
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|||||||| || |||||||| ||||| ||| |||||| ||||||||||| | ||| ||||| || || |||||||||||| |
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| T |
6209455 |
ttcattcgaatttcccaagttaaaggactacaaggtccaacatcaccatgtaaccattgctccaagttaccattgtcaaca |
6209375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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