View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_31 (Length: 460)
Name: NF11854_low_31
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 451
Target Start/End: Original strand, 41739846 - 41740290
Alignment:
| Q |
7 |
ataaccccagttccaaattgaatacaaatattaacaatcatagtaatcactaaaatagccatagccaaaacattcatcatggtttcactgttctgcgtca |
106 |
Q |
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| T |
41739846 |
ataaccccagttccaaattgaatacaaatattaacaatcatagtaatcactaaaatagccatagccaaaacattcatcatggtttcactgttctgcgtca |
41739945 |
T |
|
| Q |
107 |
caccaagagaaggcatagaattagccatgatagtgcaaatgatagcactgctagctagctttgctagctgatcatgacggtgaggcataggagtgttgag |
206 |
Q |
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| T |
41739946 |
caccaagagaaggcatagaattagccatgatagtgcaaatgatagcactgctagctagctttgctagctgatcatgacggtgaggcataggagtgttgag |
41740045 |
T |
|
| Q |
207 |
atcaacggagagtttgacggaaacagcgattatggttaaggaagttgcattgagacaaaagtatttgcaagggaaccatagttttcgggttttgatgcct |
306 |
Q |
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| T |
41740046 |
atcaacggagagtttgacggaaacagcgattatggttaaggaagttgcattgagacaaaagtatttgcaagggaaccatagttttcgggttttgatgcct |
41740145 |
T |
|
| Q |
307 |
ttaatgagatctgcagacattgaaataagagataaaagtgatgctgttgctatgtagactcctatccatggcattggcttgctgaaatttgtgtcatcta |
406 |
Q |
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| T |
41740146 |
ttaatgagatctgcagacattgaaataagagataaaagtgatgctgttgctatgtagactcctatccatggcattggcttgctgaaatttgtgtcatcta |
41740245 |
T |
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| Q |
407 |
agtgtccttcactgttgcacatgttttttgccatctttattcttc |
451 |
Q |
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| T |
41740246 |
agtgtccttcactgttgcacatgttttttgccatctttattcttc |
41740290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 457
Target Start/End: Complemental strand, 41745914 - 41745464
Alignment:
| Q |
7 |
ataaccccagttccaaattgaatacaaatattaacaatcatagtaatcactaaaatagccatagccaaaacattcatcatggtttcactgttctgcgtca |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| | || | |
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| T |
41745914 |
ataaccccagttccaaattgaatacagatattaacaatcatagtaactactaaaatagccatagccaaaacattcaacatggtttcattgttcggtgtga |
41745815 |
T |
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| Q |
107 |
caccaagagaaggcatagaattagccatgatagtgcaaatgatagcactgctagctagctttgctagctgatcatgacggtgaggcataggagtgttgag |
206 |
Q |
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| T |
41745814 |
caccaagagatggcatggaattagccatgattgtgcagattaaagcactgctagctagtttcgctagctgatcatgacggtgaggcataggagtgttgag |
41745715 |
T |
|
| Q |
207 |
atcaacggagagtttgacggaaacagcgattatggttaaggaagttgcattgagacaaaagtatttgcaagggaaccatagttttcgggttttgatgcct |
306 |
Q |
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|||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41745714 |
atcaaccgagagttttaaagaaacagcgattatggttaaggaagttgcgttgagacaaaagtatttgcaagggaaccatagtttgcgggttttgatgcct |
41745615 |
T |
|
| Q |
307 |
ttaatgagatctgcagacattgaaataagagataaaagtgatgctgttgctatgtagactcctatccatggcattggcttgctgaaatttgtgtcatcta |
406 |
Q |
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|||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| | || || |||| |
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| T |
41745614 |
ttaatgaggtctgcagacatagaaatgagacataaaagtgatgctgttgctatgtagattccaatccatggcattggtttgctgaattgtgcatcgtcta |
41745515 |
T |
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| Q |
407 |
agtgtccttcactgttgcacatgttttttgccatctttattcttctctgct |
457 |
Q |
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| |||||||||||||||||||| ||||||| |||| | ||||||| ||||| |
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| T |
41745514 |
actgtccttcactgttgcacatattttttgtcatcctcattcttcactgct |
41745464 |
T |
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