View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_32 (Length: 451)
Name: NF11854_low_32
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 34059387 - 34059819
Alignment:
| Q |
17 |
acatccatcctcttgttcctatcactatacattaccttcaaagacacttcaatcaagatattgaagacctttcaaccactccaagaa------------- |
103 |
Q |
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| T |
34059387 |
acatccatcctcttgttcttatcactaaacattaccttcaaagacacttcaatcaagatattgaagacctttcaaccactccaagaaacttgcttgcaag |
34059486 |
T |
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| Q |
104 |
--gctctagctcaatcagtcattgcctctacactgattttctcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattcttata |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34059487 |
aagctctagctcaatctgtcattgcctctacactgattttcgcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattgttata |
34059586 |
T |
|
| Q |
202 |
ccaattttaagaacagctttgtaagnnnnnnnggagtaaaatgccattaaaatacaacaaagtcacaaccacagatcaatctcacattttcaggcaaaac |
301 |
Q |
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| T |
34059587 |
ccaattttaagaacagttttgtaagaaaaaaaggagtaaaatgccattaaaatacaacaaagtcacaaccacagatcaatctcacattttcaggcaaaac |
34059686 |
T |
|
| Q |
302 |
cacactttgtgattcgatatcataacttttttgcttcggcgcttccttacttgggtcaagtcagaacaatagttaatcgagtgaagcatgctgttaaaac |
401 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34059687 |
cacactttgtgattcgatatcacaacttttttgcttcggcgcttccttacttgggtcaagtcagaacaatagttaatccagtgaagcatgctgttaaaac |
34059786 |
T |
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| Q |
402 |
agtatgaatgaagataaaaacattcaaggatgt |
434 |
Q |
| |
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| T |
34059787 |
agtatgaatgaagataaaaacattcaaggatgt |
34059819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 433
Target Start/End: Complemental strand, 22232676 - 22232520
Alignment:
| Q |
282 |
ctcacattttcaggcaaaaccacactttgtgattcgatatcataa--cttttttgcttcggcg---cttccttacttgggtcaagtcagaacaatagtta |
376 |
Q |
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|||| |||| |||| ||| ||||||||||| |||| |||||| || ||| | |||||||||| || || ||||||| |||||| || |||||||| | |
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| T |
22232676 |
ctcatatttccaggaaaagccacactttgtcattcaatatcacaaaacttctctgcttcggcggcactaccctacttggatcaagtaaggacaatagtga |
22232577 |
T |
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| Q |
377 |
atcgagtgaagcatgctgttaaaacagtatgaatgaagataaaaacattcaaggatg |
433 |
Q |
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||| |||| |||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
22232576 |
atccagtggagcaggctgtcaaaacagttggaatgaagataaaaacattcaaggatg |
22232520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 6504910 - 6505034
Alignment:
| Q |
100 |
agaagctctagctcaatcagtcattgcctctacactgattttctcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattctta |
199 |
Q |
| |
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|||||||||||||| || || |||||||| ||| || ||| || |||||||| | ||||| |||||||||||||||| |||||| | |||||| | | |
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| T |
6504910 |
agaagctctagctccatttgtatttgcctcttcaccgactttttcctactctccggcgaattgctctcaaagggtgttagccttttaaccgcaattatga |
6505009 |
T |
|
| Q |
200 |
taccaattttaagaacagctttgta |
224 |
Q |
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|||| ||| |||||||| |||||| |
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| T |
6505010 |
gaccattttcaagaacagttttgta |
6505034 |
T |
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