View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_33 (Length: 417)

Name: NF11854_low_33
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_33
NF11854_low_33
[»] chr1 (11 HSPs)
chr1 (1-417)||(6517077-6517502)
chr1 (4-417)||(6512681-6513103)
chr1 (1-416)||(6521534-6521958)
chr1 (1-417)||(6506771-6507202)
chr1 (288-384)||(47713349-47713445)
chr1 (129-236)||(47778041-47778148)
chr1 (151-380)||(47718012-47718235)
chr1 (288-384)||(47745932-47746028)
chr1 (151-380)||(47760133-47760356)
chr1 (292-384)||(6500239-6500331)
chr1 (151-216)||(6523745-6523810)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-417)||(796-1227)
scaffold0341 (1-417)||(8449-8881)
[»] chr5 (3 HSPs)
chr5 (201-380)||(28856511-28856690)
chr5 (271-380)||(28831385-28831494)
chr5 (271-380)||(28861858-28861967)
[»] chr7 (1 HSPs)
chr7 (175-320)||(722161-722305)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 6517077 - 6517502
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517077 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcg 6517176  T
Q  101 ccgtgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtacca 200  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517177 ccgtcttcaaactccatgcttcataataaggtctagtgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtacca 6517276  T
Q  201 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517277 accaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 6517376  T
Q  301 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgag---------aagggtgt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  6517377 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatggataaaagggtgt 6517476  T
Q  392 taaggtttgtgtggtaggtgctgttg 417  Q
    ||||||||||||||||||||||||||    
T  6517477 taaggtttgtgtggtaggtgctgttg 6517502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 417
Target Start/End: Original strand, 6512681 - 6513103
Alignment:
Q  4 acagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcgccg 103  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| | ||      
T  6512681 acagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcat 6512780  T
Q  104 tgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaacc 203  Q
    |||||||||||||| ||  |||| |||||| | | ||||  ||||| ||||||||||||  ||||||||||||||||||| |||| ||||| ||||||||    
T  6512781 tgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaacc 6512880  T
Q  204 aattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagt 303  Q
    ||| || | ||||| |||||||||||||||||||||||| |||| |||||| |  |  |||||| |||||||||| ||||| | ||||||||| || |||    
T  6512881 aatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagt 6512980  T
Q  304 ccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaa 394  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||         |||||||||||||    
T  6512981 ccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaa 6513080  T
Q  395 ggtttgtgtggtaggtgctgttg 417  Q
    ||||| |||| ||||||||||||    
T  6513081 ggtttttgtgataggtgctgttg 6513103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 6521958 - 6521534
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   |||  |||||| | ||| ||| | |||||| | |    
T  6521958 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttg 6521859  T
Q  101 ccgtgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtacca 200  Q
    |  ||||   | ||||  |   ||||  ||||||||| || | ||||||||||||||||||| ||||||||||||||||||||   ||||| | ||||||    
T  6521858 cgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtacca 6521759  T
Q  201 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 300  Q
     |||||||||| |||||  ||||||||| ||||||||||||  ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| |||    
T  6521758 tccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacat 6521659  T
Q  301 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgag---------aagggtgt 391  Q
    |||||||| ||||||||||||||  ||||  | ||||||||||| |||||||||||||||||||| |||||||||||||||||         ||||||||    
T  6521658 agtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgt 6521559  T
Q  392 taaggtttgtgtggtaggtgctgtt 416  Q
    |||||||||||||||||||||||||    
T  6521558 taaggtttgtgtggtaggtgctgtt 6521534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 6506771 - 6507202
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t 94  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||||       |    
T  6506771 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 6506870  T
Q  95 ttatcgccgtgttcaaactccatgct-tcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 193  Q
    || | ||  | | |||| |||||||  ||||   | ||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |    
T  6506871 ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgt 6506969  T
Q  194 cgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcc 293  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||    
T  6506970 cgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc 6507069  T
Q  294 tctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------aga 384  Q
    ||| || |||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||    
T  6507070 tctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggataga 6507169  T
Q  385 agggtgttaaggtttgtgtggtaggtgctgttg 417  Q
    ||||| || ||||||||||||||||||||||||    
T  6507170 agggttttgaggtttgtgtggtaggtgctgttg 6507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 47713349 - 47713445
Alignment:
Q  288 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 384  Q
    |||||||||||| |||||||| ||||||||||||||| |||||  |||||||||| | || |||||||||||||||||||   ||||||||||||||    
T  47713349 atctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga 47713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 47778148 - 47778041
Alignment:
Q  129 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaa 228  Q
    ||||||||| |||| ||| | |||||||||||||  ||||||||||||||||||| | ||||| |||||||||||||||||||  ||| | ||| |||||    
T  47778148 aggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaa 47778049  T
Q  229 agttgtgt 236  Q
    ||||||||    
T  47778048 agttgtgt 47778041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 380
Target Start/End: Original strand, 47718012 - 47718235
Alignment:
Q  151 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttg 250  Q
    |||||||| ||| |||||||||||||||||||       ||| | ||||||||||| |||| ||||   ||| ||||||||| ||| ||||  ||  |||    
T  47718012 aatattgatcggtttgagtaacgcaacatgcag------tcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttg 47718105  T
Q  251 aattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttata 350  Q
    |||  | ||||||| |||| ||| | |  ||||| | |||||||||||| || ||||  ||||||||||||||  |||||  |||||||||| | || ||    
T  47718106 aatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgta 47718205  T
Q  351 gaaaccgtagttgatttctttgttggaagt 380  Q
    ||||||||||||||||||| ||||||||||    
T  47718206 gaaaccgtagttgatttctgtgttggaagt 47718235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 47745932 - 47746028
Alignment:
Q  288 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 384  Q
    |||||||||||| |||||||| ||||||||||| ||  |||||  |||||||||| | || |||||||||||||||||||   ||||||||||||||    
T  47745932 atctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga 47746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 380
Target Start/End: Original strand, 47760133 - 47760356
Alignment:
Q  151 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttg 250  Q
    |||||||| ||| |||||||||||||||||||  ||||||      ||||||||||||||| ||||   ||| ||||||||| ||| ||||  ||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  251 aattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttata 350  Q
    |||  | ||||||| | || ||| | |  ||||| | ||||||||| || |||||||| ||||||||||||||  |||||  |||||||||    || ||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgta 47760326  T
Q  351 gaaaccgtagttgatttctttgttggaagt 380  Q
    |||||||||||||||||||  |||||||||    
T  47760327 gaaaccgtagttgatttctgcgttggaagt 47760356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 6500239 - 6500331
Alignment:
Q  292 cctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 384  Q
    |||| ||||||||| || ||||  |||||||||||||||  |||||  ||  | || ||||||||||||||||||||| ||||||||||||||    
T  6500239 cctcggcatagtccgatcgcgtagactttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgaga 6500331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 6523810 - 6523745
Alignment:
Q  151 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgtttt 216  Q
    ||||| ||||||  ||| ||||||||||||||| | ||||| || |||||||||||||||| ||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttt 6523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 796 - 1227
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t 94  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||||       |    
T  796 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 895  T
Q  95 ttatcgccgtgttcaaactccatgct-tcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 193  Q
    || | ||  | | |||| |||||||  ||||   | ||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |    
T  896 ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgt 994  T
Q  194 cgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcc 293  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||    
T  995 cgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcc 1094  T
Q  294 tctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------aga 384  Q
    ||| || |||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||    
T  1095 tctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggataga 1194  T
Q  385 agggtgttaaggtttgtgtggtaggtgctgttg 417  Q
    ||||| || ||||||||||||||||||||||||    
T  1195 agggttttgaggtttgtgtggtaggtgctgttg 1227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 8449 - 8881
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttca------t 94  Q
    ||||||||||||||||||||||| ||||| |||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||||       |    
T  8449 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 8548  T
Q  95 ttatcgccgtgttcaaactccatgct-tcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 193  Q
    || | ||  | | |||| |||||||  ||||   | ||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |    
T  8549 ttgttgcgttctgcaaattccatgcaatcatggca-ggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgt 8647  T
Q  194 cgtaccaaccaattgcttgttttc-tattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctc 292  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | |||||    
T  8648 cgtaccatccaattgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctc 8747  T
Q  293 ctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------ag 383  Q
    |||| || |||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||         ||    
T  8748 ctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 8847  T
Q  384 aagggtgttaaggtttgtgtggtaggtgctgttg 417  Q
    |||||| || ||||||||||||||||||||||||    
T  8848 aagggttttgaggtttgtgtggtaggtgctgttg 8881  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 380
Target Start/End: Original strand, 28856511 - 28856690
Alignment:
Q  201 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 300  Q
    ||||||||||| |||| | ||| |||||  |||||||||||  ||  ||||||| |  |||||| | || |||||||| || || | |||||||||||||    
T  28856511 accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat 28856610  T
Q  301 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagt 380  Q
    | ||| || |||| |||||||| | ||| |  |||  | ||| |||| |||||||||||| |||||||| ||||||||||    
T  28856611 aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagt 28856690  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 28831385 - 28831494
Alignment:
Q  271 caatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctt 370  Q
    |||||||| || || | ||||||||| |||| ||| || |||| |||||||| | ||  | |||| || ||| |||| |||||||||||| ||||||||     
T  28831385 caatcatttggattaacatctcctctacataatcctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctg 28831484  T
Q  371 tgttggaagt 380  Q
    ||||||||||    
T  28831485 tgttggaagt 28831494  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 28861858 - 28861967
Alignment:
Q  271 caatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctt 370  Q
    |||||||| || || | |||||||||||||| ||| || |||| |||||||| | ||| |  |||  | ||| |||| |||||||||||| ||||||||     
T  28861858 caatcatttggattaacatctcctctgcataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctg 28861957  T
Q  371 tgttggaagt 380  Q
    ||||||||||    
T  28861958 tgttggaagt 28861967  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 320
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  175 aacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaat 274  Q
    ||||||||| | |||||||||||| | |||||||||| |||||  ||||   || ||||||||||||  ||| |||||| || | | |||||| ||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaattt-gacaat 722207  T
Q  275 cattcggttttaaatctcctctgcatagtccaattgcgtttacttt 320  Q
    ||||  | || | ||||||||| ||||||||||   ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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