View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_35 (Length: 404)

Name: NF11854_low_35
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_35
NF11854_low_35
[»] chr8 (1 HSPs)
chr8 (1-400)||(4336981-4337380)
[»] chr2 (3 HSPs)
chr2 (245-401)||(43510805-43510961)
chr2 (273-343)||(40313088-40313158)
chr2 (92-128)||(32843724-32843760)
[»] chr4 (4 HSPs)
chr4 (273-400)||(21743373-21743500)
chr4 (91-132)||(8457932-8457973)
chr4 (90-134)||(19262934-19262978)
chr4 (90-138)||(19447886-19447934)
[»] chr3 (2 HSPs)
chr3 (276-376)||(51354602-51354702)
chr3 (97-147)||(47362554-47362604)
[»] chr6 (2 HSPs)
chr6 (89-158)||(33501976-33502044)
chr6 (90-132)||(18803254-18803296)
[»] chr7 (2 HSPs)
chr7 (84-141)||(31753765-31753823)
chr7 (89-149)||(18750866-18750926)
[»] chr1 (1 HSPs)
chr1 (90-131)||(43609828-43609869)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 4337380 - 4336981
Alignment:
Q  1 aggggagggaaaagttctctccggcaccgacacttctaattgaaagtgtgtcctgtgtccgacgcatgttagtgtccaacacgacacggacatgtgatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337380 aggggagggaaaagttctctccggcaccgacacttctaattgaaagtgtgtcctgtgtccgacgcatgttagtgtccaacacgacacggacatgtgatta 4337281  T
Q  101 cattcaattatgaaattttctcatattattactgatatcgacgtgtcagcgtcatgtccatgtcagttctacataggaaaagttcctccctaattgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337280 cattcaattatgaaattttctcatattattactgatatcgacgtgtcagcgtcatgtccatgtcagttctacataggaaaagttcctccctaattgaaaa 4337181  T
Q  201 aactaaacagactatcaagaatctcaacaacaacaacataaacttacattttgggtgttttgacgaaaatagccattctcatacaccaggtgagacacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337180 aactaaacagactatcaagaatctcaacaacaacaacataaacttacattttgggtgttttgacgaaaatagccattctcatacaccaggtgagacacct 4337081  T
Q  301 gcttctgcaacctatcattttcctccatcagcagcttattcatggctgtcaacttcctattcacaccttgcaacctgaaagactcttttctctgcttctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337080 gcttctgcaacctatcattttcctccatcagcagcttattcatggctgtcaacttcctattcacaccttgcaacctgaaagactcttttctctgcttctc 4336981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 245 - 401
Target Start/End: Original strand, 43510805 - 43510961
Alignment:
Q  245 tacattttgggtgttttgacgaaaatagccattctcatacaccaggtgagacacctgcttctgcaacctatcattttcctccatcagcagcttattcatg 344  Q
    ||||||||| || | ||| ||||| |||||||| ||||||||||  ||||| || || ||||||||||||||||| || ||||||||||||||||||||     
T  43510805 tacattttgagtatgttggcgaaagtagccattttcatacaccaaatgagatacttgtttctgcaacctatcattctcttccatcagcagcttattcata 43510904  T
Q  345 gctgtcaacttcctattcacaccttgcaacctgaaagactcttttctctgcttctcc 401  Q
    ||  ||||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  43510905 gcactcaacttcctattcacagcttgcaaccttgaagcctcttttctctgcttctcc 43510961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 40313158 - 40313088
Alignment:
Q  273 ccattctcatacaccaggtgagacacctgcttctgcaacctatcattttcctccatcagcagcttattcat 343  Q
    |||||||||| |||||| || || ||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  40313158 ccattctcattcaccagctgtgaaacctgcttctgcagcctctcattttcctccatcaacagcttattcat 40313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 32843760 - 32843724
Alignment:
Q  92 atgtgattacattcaattatgaaattttctcatatta 128  Q
    |||||||||||||||||||||  ||||||||||||||    
T  32843760 atgtgattacattcaattatgtcattttctcatatta 32843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 400
Target Start/End: Original strand, 21743373 - 21743500
Alignment:
Q  273 ccattctcatacaccaggtgagacacctgcttctgcaacctatcattttcctccatcagcagcttattcatggctgtcaacttcctattcacaccttgca 372  Q
    ||||||||| |||| || || ||||| || |||||||||||||||||||||||||||| || ||| ||||| || | ||| ||||||||||||  ||| |    
T  21743373 ccattctcacacacaagctgtgacacttgtttctgcaacctatcattttcctccatcaacaacttgttcattgcagacaatttcctattcacagtttgaa 21743472  T
Q  373 acctgaaagactcttttctctgcttctc 400  Q
     |||  ||| ||||||||||||||||||    
T  21743473 gccttgaagcctcttttctctgcttctc 21743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 8457973 - 8457932
Alignment:
Q  91 catgtgattacattcaattatgaaattttctcatattattac 132  Q
    ||||||||||||||||||||||  ||||||||| ||||||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaattattac 8457932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 19262934 - 19262978
Alignment:
Q  90 acatgtgattacattcaattatgaaattttctcatattattactg 134  Q
    |||||||||||||||||||||||  || |||||| ||||||||||    
T  19262934 acatgtgattacattcaattatgtcatcttctcaaattattactg 19262978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 19447886 - 19447934
Alignment:
Q  90 acatgtgattacattcaattatgaaattttctcatattattactgatat 138  Q
    ||||||| ||||||||||||||  |||||| ||| ||||||||||||||    
T  19447886 acatgtggttacattcaattatccaattttatcaaattattactgatat 19447934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 51354702 - 51354602
Alignment:
Q  276 ttctcatacaccaggtgagacacctgcttctgcaacctatcattttcctccatcagcagcttattcatggctgtcaacttcctattcacaccttgcaacc 375  Q
    |||||||| || ||||| ||||| || |||||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||| |||||| |||| ||||    
T  51354702 ttctcatagacaaggtgtgacacttgtttctgcaatctatcattttcctccataagcagtttgttcattgctgttaacttcctgttcacagcttgtaacc 51354603  T
Q  376 t 376  Q
    |    
T  51354602 t 51354602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 47362604 - 47362554
Alignment:
Q  97 attacattcaattatgaaattttctcatattattactgatatcgacgtgtc 147  Q
    |||||||||||||||| |||||||| | |||||||||||| | ||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacgtgtc 47362554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 33501976 - 33502044
Alignment:
Q  89 gacatgtgattacattcaattatgaaattttctcatattattactgatatcgacgtgtcagcgtcatgtc 158  Q
    |||||||||| ||||||||||||  |||||||||| | ||||||||||||| ||||||||| || |||||    
T  33501976 gacatgtgat-acattcaattattcaattttctcaaactattactgatatcaacgtgtcagtgttatgtc 33502044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 18803296 - 18803254
Alignment:
Q  90 acatgtgattacattcaattatgaaattttctcatattattac 132  Q
    ||||||||||||||||||||||| |||||||||| || |||||    
T  18803296 acatgtgattacattcaattatgtaattttctcaaataattac 18803254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 31753765 - 31753823
Alignment:
Q  84 acacggaca-tgtgattacattcaattatgaaattttctcatattattactgatatcga 141  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||| ||||| ||||||    
T  31753765 acacggacaatgtgattacattcaattatttaattttctcaaattactactggtatcga 31753823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 18750926 - 18750866
Alignment:
Q  89 gacatgtgattacattcaattatgaaattttctcatattattactgatatcgacgtgtcag 149  Q
    ||||||||||||||||||||||||  ||||||| | |||||||| | | |||| |||||||    
T  18750926 gacatgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcag 18750866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 43609828 - 43609869
Alignment:
Q  90 acatgtgattacattcaattatgaaattttctcatattatta 131  Q
    |||||||||||||||||||||||  ||||||||| |||||||    
T  43609828 acatgtgattacattcaattatgttattttctcaaattatta 43609869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University