View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_37 (Length: 396)
Name: NF11854_low_37
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 590793 - 590422
Alignment:
| Q |
18 |
acagacgtgtttgctggaagtcttataggttagtccattttttgcatctcaattagttgcaaattaacttagccaacaattaaaccnnnnnnnnnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
590793 |
acagacgtgtttgctggaagtcttataggttagtccattttttgcatctcaattagttgcaaattaacttagccaacaattaaaccaaaaaaataaaaaa |
590694 |
T |
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| Q |
118 |
ttcttttagtgtttgttggtattgactatgtgaaatttcttctttcaggaattgttgtagctactttttgctatttgcagttttttcctcctccttatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
590693 |
ttcttttagtgtttgttggtattgactatgtgaaatttcttcattcaggaattgtagtagctactttttgctatttgcagttttttcctcctccttatca |
590594 |
T |
|
| Q |
218 |
tcctgaaggtatgcctcagtccagattctattattttagatgataatatgtttcctaatgtatttgatt----nnnnnnnnnnnnnnctcctaatgtatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||| |||||||||||| |
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| T |
590593 |
tcctgaaggtatgcctcagtccagattctattattttagataataa-atgtttcccaatgtattttattaaaaacaaaaaacaaaaattcctaatgtatt |
590495 |
T |
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| Q |
314 |
gaaaaatgtttgtttttaggtctttctattatatccattaatattactccacttacatttctctacttctgtg |
386 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
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| T |
590494 |
gaaaaatgtttgtttttaggtctttctattatatgcattaatattactccatttacatttctctacttgtgtg |
590422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 31700307 - 31700434
Alignment:
| Q |
120 |
cttttagtgtttgttggtat-tgactatgtgaaatttcttctttcaggaattgttgtagctactttttgctatttgcagttttttcctcctccttatcat |
218 |
Q |
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| T |
31700307 |
cttttagtgtttgttggtacatgactatgtgagatttcttctttcagggcttgtagtagctactttttgctatttgcagttttttcctcctccttatcat |
31700406 |
T |
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| Q |
219 |
cctgaaggtatgcctcagtccagattct |
246 |
Q |
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| T |
31700407 |
catgaaggtatgcctctgtgcagattct |
31700434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 31700214 - 31700282
Alignment:
| Q |
21 |
gacgtgtttgctggaagtcttataggttagtccattttttgcatctcaattagttgcaaattaacttag |
89 |
Q |
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||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
31700214 |
gacgtgtttgctggaggtcttataggttagtccatttatcacatctcaattagttgcaaattaacttag |
31700282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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