View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_38 (Length: 387)
Name: NF11854_low_38
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 48132127 - 48132500
Alignment:
| Q |
1 |
aattgggaatcacgtgataccattaagacaaaacccccgaccaagtgattaattaaacnnnnnnnn--cttcaatttcgagagagaaagaactttgaaca |
98 |
Q |
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| T |
48132127 |
aattgggaatcacgtgataccattaagacaaaacccccgaccaagtgattaattaaacaaaaaaaaaacttcaatttcgagagagaaagaactttgaaca |
48132226 |
T |
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| Q |
99 |
attcacttcagtcaaaacatcatgtcatagaagtaattnnnnnnn-ttaaatattgaagtagtagtaaaatgnnnnnnnagctctttgtgctactgctta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48132227 |
attcacttcagtcaaaacatcatgtcatagaagtaattaaaaaaaattaaatattgaagtagtagtaaaatgtttttttagctctttgtgctactgctta |
48132326 |
T |
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| Q |
198 |
gcttagcttaattttattgattaaggtagctaacactaattaacaaagaggagatctatgaggaactccttttcttctactaatcatactagtagccata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48132327 |
gcttagcttaattttattgattaaggtagctaacactaattaacaaagaggagatctatgaggaactccttttcttctactaatcatactagtagccata |
48132426 |
T |
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| Q |
298 |
tcttcatcagaaactttattgctattagaattggccatgaattttgcacacatacttgtccatccactccttct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48132427 |
tcttcatcagaaactttattgctattagaattggccatgaattttgcacacatacttgtccatccactccttct |
48132500 |
T |
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