View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_39 (Length: 386)
Name: NF11854_low_39
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_39 |
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| [»] scaffold0459 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 12319316 - 12319677
Alignment:
| Q |
15 |
gtcatcacaaaaagtata----gtgtactagttttacacgttcaaagaaaaatcaacaagaaacatacatactataaatcaataacaacttaaaatgcaa |
110 |
Q |
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| T |
12319316 |
gtcatcacaaaaagtatatatagtgtactagttttacacgttcaaagaaaaatcaacaagaaacacacatactacaaatcaataacaacttaaaatgcaa |
12319415 |
T |
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| Q |
111 |
taacagaaactcacatatctagtccttgactttccatagcctcactaagacaagcaaccacatttcttcctatctagttttgttcttcaaggaactttca |
210 |
Q |
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| T |
12319416 |
taacagaaactcacatatctagtccttgactttccatagcctcactaagacaagaaaccacatctcttcctatctagttttgttcttcaaggaactttca |
12319515 |
T |
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| Q |
211 |
aactgcacaactgaactatgattatttacattagacataccaatcattgttaccaagtataatttatgcagagtcatacaaagcacaactcgttaacatt |
310 |
Q |
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| T |
12319516 |
aactgcacaactgaactatgattatttacattagacataccaatcattgttaccaagtataatttatgcagagtcatacaaagcacaactcgttaacatt |
12319615 |
T |
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| Q |
311 |
attttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtcca |
372 |
Q |
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| T |
12319616 |
attttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtcca |
12319677 |
T |
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Target: scaffold0459 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 9197 - 9241
Alignment:
| Q |
41 |
gttttacacgttcaaagaaaaatc-aacaagaaacatacatacta |
84 |
Q |
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| T |
9197 |
gttttacacgttcaaagaaaaatcaaacaagaaacataaatacta |
9241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 8015783 - 8015849
Alignment:
| Q |
114 |
cagaaactcacatatctagtccttgactttccatagcctcactaagacaagcaaccacatttcttcc |
180 |
Q |
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| T |
8015783 |
cagaaactcgcatatctagtccttgtctttccaaagcctcgttcaaacaagcaactacatctcttcc |
8015849 |
T |
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