View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_4 (Length: 872)

Name: NF11854_low_4
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_4
NF11854_low_4
[»] chr4 (3 HSPs)
chr4 (19-703)||(36087229-36087928)
chr4 (601-665)||(4928697-4928761)
chr4 (554-673)||(32007912-32008033)
[»] chr2 (4 HSPs)
chr2 (704-775)||(203517-203588)
chr2 (724-775)||(202852-202903)
chr2 (827-862)||(202955-202990)
chr2 (558-700)||(11673416-11673559)
[»] chr6 (1 HSPs)
chr6 (704-775)||(22681487-22681558)
[»] chr5 (5 HSPs)
chr5 (558-627)||(36855236-36855305)
chr5 (572-663)||(10240684-10240776)
chr5 (602-700)||(14570280-14570380)
chr5 (557-684)||(5069100-5069229)
chr5 (643-700)||(3068042-3068100)
[»] scaffold0072 (2 HSPs)
scaffold0072 (701-775)||(49180-49254)
scaffold0072 (724-775)||(48440-48491)
[»] scaffold0755 (1 HSPs)
scaffold0755 (724-775)||(4398-4449)
[»] chr8 (4 HSPs)
chr8 (572-700)||(41643153-41643283)
chr8 (704-740)||(32327040-32327076)
chr8 (586-673)||(7888408-7888492)
chr8 (636-700)||(11539082-11539147)
[»] chr7 (4 HSPs)
chr7 (611-700)||(31446971-31447062)
chr7 (586-660)||(31078474-31078549)
chr7 (639-700)||(2916196-2916258)
chr7 (553-623)||(35195352-35195422)
[»] chr1 (5 HSPs)
chr1 (558-663)||(8904724-8904829)
chr1 (537-631)||(22572076-22572170)
chr1 (559-636)||(26515676-26515752)
chr1 (598-700)||(13017752-13017856)
chr1 (555-627)||(27232304-27232376)
[»] chr3 (3 HSPs)
chr3 (554-665)||(3519303-3519415)
chr3 (554-696)||(6056609-6056753)
chr3 (558-666)||(5323841-5323949)


Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Complemental strand, 36087928 - 36087229
Alignment:
Q  19 acaggtggatcgttagccataacaggtaga-gaagtgatgatcaagttgatgatacaatctattcctacata----gtacatgagtatttttcttagtcc 113  Q
    |||||||||||||||||||||| ||| | | ||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||    
T  36087928 acaggtggatcgttagccataaaagggaaaagaagtgatgatcaagttgatgatgcaatctattcctacatatatagtacatgagtatttttcttagtcc 36087829  T
Q  114 tcggtatttaggggatgagattcagaaactcgtgaattcattttggtggggctggggtggaaacaacgagagcggtaaactagctttaaggagacaattt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36087828 tcggtatttaggggatgagattcagaaactcgtgaattcattttggtggggctggggtggaaacaatgagagcggtaaactagctttaaggagacaattt 36087729  T
Q  214 tcaatgcgaaatggtttttatcatgacaatcagtctcacgaaccatcacgagtgatcttgcccagttcgaagtcaattcttcaatttcatttttaactac 313  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36087728 tcaatgggaaatggtttttatcgtgacaatcagtctcacgaaccatcacgagtgatcttgcccagttggaagtcaattcttcaatttcatttttaactac 36087629  T
Q  314 tcttgtatggttagtggaagatatttaatagtattcagctattcttgacaaattcgct---------------atatatagaattgcccattttcaatta 398  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||               |||||||||||||||||||||||||||    
T  36087628 tcttgtatggttagtggaagatatttaatagtatttagctattcttgacaaattcgctatatttgtcatcgctatatatagaattgcccattttcaatta 36087529  T
Q  399 gtaagtctcatggtgaaatgggctttcgtaacttgtatgactctcaaggccggcattgtgcaagtgcaacaaggcctttgacacagggcctcaaatatag 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  36087528 gtaagtctcatggtgaaatgggctttcgtaacttgtatgactctcaaggccggcatcgtgcaagtgcaacaaggcctttgacagagggcctcaaatatag 36087429  T
Q  499 gggactcaaaatttttaaaaaggnnnnnnnnnnnnntcttgtacctacgatgaatatccgtcactaaatatcctttttccgtagatgaaagtctgaaaaa 598  Q
    ||||||||||||||| |||||||               |||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |    
T  36087428 gggactcaaaattttaaaaaaggaaaaaaatat-----ttgtacctacgatgaatatctgtcactaaatgtcctttttccgtaggtgaaagtctgaaaga 36087334  T
Q  599 caacaattttgctgtcaattatgcattatccatggataaagtctatttgtatgtagataaaagtcatgcttgaacattgatcatatgtttaactacaact 698  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36087333 caacaattttgttgtcgattatgcattatctatggataaagtctatttgtatgtagataaaagtcatgcttgaacattgctcatatgtttaactacaact 36087234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 665
Target Start/End: Original strand, 4928697 - 4928761
Alignment:
Q  601 acaattttgctgtcaattatgcattatccatggataaagtctatttgtatgtagataaaagtcat 665  Q
    ||||||||||||||||||||||||| || || ||||| |||||||||| ||||  ||||||||||    
T  4928697 acaattttgctgtcaattatgcattgtctatagataatgtctatttgtttgtaagtaaaagtcat 4928761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 673
Target Start/End: Complemental strand, 32008033 - 32007912
Alignment:
Q  554 atccgtcactaaatatcctttttccg-tagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaag-tctatttgtatg 651  Q
    |||| ||||||||| || |||||||  ||| | ||||| || |||||| |||||||||||||||||||| ||| |||||   ||||| ||||||| |  |    
T  32008033 atccatcactaaatgtcatttttcccctaggtaaaagtttggaaaacatcaattttgctgtcaattatgaattgtccataagtaaagatctatttatccg 32007934  T
Q  652 tagataaaagtcatgcttgaac 673  Q
    ||| ||||||||||| ||||||    
T  32007933 taggtaaaagtcatgtttgaac 32007912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 704 - 775
Target Start/End: Complemental strand, 203588 - 203517
Alignment:
Q  704 gggaagcacttcagtgccatagtgccatggtgccattaacccaattagattttgacacgtggcaatgctaat 775  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  203588 gggaagcacttcggtgccatagtgccatggtgccattaccccaatcagattttgacacgtggcaatgctaat 203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 724 - 775
Target Start/End: Original strand, 202852 - 202903
Alignment:
Q  724 agtgccatggtgccattaacccaattagattttgacacgtggcaatgctaat 775  Q
    |||||||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  202852 agtgccattgtgccattaccccaatcaaattttgacacgtggcaatgctaat 202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 827 - 862
Target Start/End: Original strand, 202955 - 202990
Alignment:
Q  827 cctgatgcacacaaacacagtctccccccttctctg 862  Q
    ||||||||||||||||||||||||||||||||||||    
T  202955 cctgatgcacacaaacacagtctccccccttctctg 202990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 700
Target Start/End: Complemental strand, 11673559 - 11673416
Alignment:
Q  558 gtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagat 656  Q
    |||||||||| || ||||||  ||| | ||||| ||||| ||| ||||||||||||||||||||||||||||||   |||| ||||| |  | | ||| |    
T  11673559 gtcactaaatgtcatttttctataggtaaaagt-tgaaagacatcaattttgctgtcaattatgcattatccataagtaaatgtctactaatctataggt 11673461  T
Q  657 aaaagtcatgcttgaac--attgatcatatgtttaactacaactta 700  Q
    |||||||||| ||||||  |||| |||||| |||||||||||||||    
T  11673460 aaaagtcatgtttgaaccaattg-tcatatatttaactacaactta 11673416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 704 - 775
Target Start/End: Complemental strand, 22681558 - 22681487
Alignment:
Q  704 gggaagcacttcagtgccatagtgccatggtgccattaacccaattagattttgacacgtggcaatgctaat 775  Q
    |||||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||    
T  22681558 gggaagcacttcagtgccatagtgccatggtgccattgcccaaatcagattttgacacgtggcaatgctaat 22681487  T

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Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 558 - 627
Target Start/End: Original strand, 36855236 - 36855305
Alignment:
Q  558 gtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattat 627  Q
    |||||||||| |||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||    
T  36855236 gtcactaaatgtcctttttccgtaggtaaaagtctgaaagacagcaattttgctgtcaattatgcattat 36855305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 572 - 663
Target Start/End: Complemental strand, 10240776 - 10240684
Alignment:
Q  572 tttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagataaaagtc 663  Q
    ||||||| || || ||||||||||| ||| ||||||||||||||||||||||||||||| || ||||   |||||||||||| | ||||||||    
T  10240776 tttttccatacataaaagtctgaaagacagcaattttgctgtcaattatgcattatccaggggtaaatacctatttgtatgtgggtaaaagtc 10240684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 602 - 700
Target Start/End: Original strand, 14570280 - 14570380
Alignment:
Q  602 caattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagataaaagtcatgcttgaa-cattgatcatatgtttaactacaactt 699  Q
    ||||||| |||||||||||||||||| ||||  |||| |||||||| ||||||| ||||||| ||| ||||| ||||| |||||| || |||||||||||    
T  14570280 caattttactgtcaattatgcattattcatgagtaaatgtctatttttatgtaggtaaaagttatgtttgaatcattgctcatatattgaactacaactt 14570379  T
Q  700 a 700  Q
    |    
T  14570380 a 14570380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 557 - 684
Target Start/End: Original strand, 5069100 - 5069229
Alignment:
Q  557 cgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtaga 655  Q
    ||||| ||||||||  |||| ||||  | ||||| ||||| || ||||||||| ||||||||||||||| | |||||||||| || ||||||| ||||      
T  5069100 cgtcattaaatatcaatttttcgtaagtaaaagtttgaaagactacaattttgttgtcaattatgcattgttcatggataaatgtttatttgtttgtatg 5069199  T
Q  656 taaaagtcatgcttgaa-cattgatcatat 684  Q
    ||||||||||| ||||| ||||| ||||||    
T  5069200 taaaagtcatgtttgaatcattgttcatat 5069229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 700
Target Start/End: Original strand, 3068042 - 3068100
Alignment:
Q  643 atttgtatgtagataaaagtcatgcttgaa-cattgatcatatgtttaactacaactta 700  Q
    |||| ||||||| |||||||||| |||||| ||||| |||||| |||||||||||||||    
T  3068042 atttttatgtaggtaaaagtcatacttgaatcattgctcatatatttaactacaactta 3068100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 701 - 775
Target Start/End: Complemental strand, 49254 - 49180
Alignment:
Q  701 taggggaagcacttcagtgccatagtgccatggtgccattaacccaattagattttgacacgtggcaatgctaat 775  Q
    |||||||||||||||||||||||| || ||||||||||||  |||||| |||||||| || ||||||||||||||    
T  49254 taggggaagcacttcagtgccataatgtcatggtgccattgccccaatcagattttgccatgtggcaatgctaat 49180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 724 - 775
Target Start/End: Original strand, 48440 - 48491
Alignment:
Q  724 agtgccatggtgccattaacccaattagattttgacacgtggcaatgctaat 775  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||||||||    
T  48440 agtgccatggtgccattgccctaatcagattttgacacgtggcaatgctaat 48491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 724 - 775
Target Start/End: Original strand, 4398 - 4449
Alignment:
Q  724 agtgccatggtgccattaacccaattagattttgacacgtggcaatgctaat 775  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  4398 agtgccatggtgccattgccccaatcagattttgacacgtggcaatgctaat 4449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 41643153 - 41643283
Alignment:
Q  572 tttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagataaaagtcatgcttg 670  Q
    ||||| ||||| | ||||| | ||| ||||| |||||||| |||||||||||||  ||||   |||| |||| ||||||||||| ||||||||||| ||     
T  41643153 ttttttcgtaggtaaaagttttaaagacaactattttgctatcaattatgcattgcccatatgtaaatgtctctttgtatgtaggtaaaagtcatgttta 41643252  T
Q  671 aac-attgatcatatgtttaactacaactta 700  Q
    ||| |||| |||||| |||||||||||||||    
T  41643253 aactattgctcatatatttaactacaactta 41643283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 740
Target Start/End: Original strand, 32327040 - 32327076
Alignment:
Q  704 gggaagcacttcagtgccatagtgccatggtgccatt 740  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32327040 gggaagcacttcagtgccatagtgtcatggtgccatt 32327076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 673
Target Start/End: Original strand, 7888408 - 7888492
Alignment:
Q  586 aaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagataaaagtcatgcttgaac 673  Q
    ||||||||||| |||| |||||| |||||||||||||    ||||| |||||| |||||||||| |||||||||| || ||| ||||||    
T  7888408 aaagtctgaaagacaataattttactgtcaattatgc----tccatagataaatgtctatttgtctgtagataaatgttatgtttgaac 7888492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 700
Target Start/End: Complemental strand, 11539147 - 11539082
Alignment:
Q  636 aaagtctatttgtatgtagataaaagtcatgcttgaa-cattgatcatatgtttaactacaactta 700  Q
    ||||||||||||| |||| |||||||||||| ||||| || || |||||| |||||||| ||||||    
T  11539147 aaagtctatttgtttgtatataaaagtcatgtttgaaccaatgctcatatatttaactataactta 11539082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 611 - 700
Target Start/End: Complemental strand, 31447062 - 31446971
Alignment:
Q  611 tgtcaattatgcattatccatggataaa-gtctatttgtatgtagataaaagtcatgcttgaa-cattgatcatatgtttaactacaactta 700  Q
    ||||||||||||||| |||||| ||||| |||||||||| ||||  ||||||||||  ||||| ||||  |||||| |||||||||||||||    
T  31447062 tgtcaattatgcattgtccatgaataaatgtctatttgtgtgtaagtaaaagtcatatttgaatcattattcatatatttaactacaactta 31446971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 660
Target Start/End: Complemental strand, 31078549 - 31078474
Alignment:
Q  586 aaagtctgaaaaacaacaattttgctgtcaattatgcattatccat-ggataaagtctatttgtatgtagataaaa 660  Q
    |||||||| || |||||||||||| ||||||||||||||| | ||| ||| || |||||||||| ||||| |||||    
T  31078549 aaagtctggaagacaacaattttgttgtcaattatgcattgttcataggaaaatgtctatttgtttgtaggtaaaa 31078474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 639 - 700
Target Start/End: Complemental strand, 2916258 - 2916196
Alignment:
Q  639 gtctatttgtatgtagataaaagtcatgcttgaa-cattgatcatatgtttaactacaactta 700  Q
    |||||||||| ||||||||||||||||| ||||| || |  |||||| |||||||||||||||    
T  2916258 gtctatttgtctgtagataaaagtcatgtttgaaccaattctcatatatttaactacaactta 2916196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 553 - 623
Target Start/End: Complemental strand, 35195422 - 35195352
Alignment:
Q  553 tatccgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgca 623  Q
    ||||||||| |||||||| |||||| |||| | || |||| ||| ||||||||| || |||||||||||||    
T  35195422 tatccgtcattaaatatcttttttctgtaggtaaatgtctaaaatacaacaattatgatgtcaattatgca 35195352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 663
Target Start/End: Original strand, 8904724 - 8904829
Alignment:
Q  558 gtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagat 656  Q
    |||| ||||| || ||||||||||||| ||||||  ||| ||| ||||||| | |||||||||||||||||||| | |||| |||||||||| ||| | |    
T  8904724 gtcattaaatgtcatttttccgtagataaaagtcc-aaagacatcaattttaccgtcaattatgcattatccataggtaaatgtctatttgtctgtgggt 8904822  T
Q  657 aaaagtc 663  Q
    |||||||    
T  8904823 aaaagtc 8904829  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 631
Target Start/End: Original strand, 22572076 - 22572170
Alignment:
Q  537 ttgtacctacgatgaatatccgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccat 631  Q
    ||||||||||  | || |||| ||||||||| || |||||| |||| | ||||||| ||| ||| ||||||| |||| |||||||||||||||||    
T  22572076 ttgtacctaccgttaaaatccatcactaaatgtcatttttctgtaggttaaagtctaaaagacatcaattttactgttaattatgcattatccat 22572170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 636
Target Start/End: Original strand, 26515676 - 26515752
Alignment:
Q  559 tcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggata 636  Q
    ||||||||| ||||||||| |||| |  |||| ||||| |||||||||||| ||||||||||||||| ||||| ||||    
T  26515676 tcactaaatgtcctttttc-gtaggtagaagtttgaaagacaacaattttgttgtcaattatgcattgtccatagata 26515752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 700
Target Start/End: Complemental strand, 13017856 - 13017752
Alignment:
Q  598 acaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagataaaagtcatgcttgaa-cattgatcatatgtttaactaca 695  Q
    |||||||||||| ||||||||| ||| | ||||| |||||| |||||||||  |||||||||||||  || ||||| | ||| | |||| ||||||||||    
T  13017856 acaacaattttgatgtcaattaggcactgtccatagataaatgtctatttgactgtagataaaagtagtgtttgaatcgttgcttatatatttaactaca 13017757  T
Q  696 actta 700  Q
    |||||    
T  13017756 actta 13017752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 627
Target Start/End: Complemental strand, 27232376 - 27232304
Alignment:
Q  555 tccgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattat 627  Q
    ||||||||||||| |  ||||||||||| | |||| |||||| ||||||| |||  |||||||||||||||||    
T  27232376 tccgtcactaaatgtattttttccgtaggtaaaagactgaaagacaacaactttattgtcaattatgcattat 27232304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 665
Target Start/End: Original strand, 3519303 - 3519415
Alignment:
Q  554 atccgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgt 652  Q
    |||||||||||||| || |||||| |||| | ||||| || |  ||| |||||||||| ||||||||| ||| |||||   |||| |||||||| |||||    
T  3519303 atccgtcactaaatgtcatttttcggtaggtaaaagtttggatgacagcaattttgctatcaattatgaattgtccataagtaaatgtctatttatatgt 3519402  T
Q  653 agataaaagtcat 665  Q
    || ||||||||||    
T  3519403 aggtaaaagtcat 3519415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 696
Target Start/End: Original strand, 6056609 - 6056753
Alignment:
Q  554 atccgtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgt 652  Q
    |||||||||||||| || ||||| ||||| | ||||| || || |||||||||||  ||| ||||||| ||| |||||   |||| |||||||| | |||    
T  6056609 atccgtcactaaatgtcattttttcgtaggtaaaagtttggaagacaacaattttattgttaattatgaattgtccataagtaaatgtctatttatttgt 6056708  T
Q  653 agataaaagtcatgcttgaac-attgatcatatgtttaactacaa 696  Q
    || ||||||||||| |||| | |||| | |||| |||||||||||    
T  6056709 aggtaaaagtcatgtttgagcaattgcttatatatttaactacaa 6056753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 666
Target Start/End: Complemental strand, 5323949 - 5323841
Alignment:
Q  558 gtcactaaatatcctttttccgtagatgaaagtctgaaaaacaacaattttgctgtcaattatgcattatccatggataaa-gtctatttgtatgtagat 656  Q
    ||||||||||||| ||| || |||| | ||||||||||| | ||||||||| |||| ||||||||||| ||  | | |||| |||||| || |||||| |    
T  5323949 gtcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggt 5323851  T
Q  657 aaaagtcatg 666  Q
    ||||||||||    
T  5323850 aaaagtcatg 5323841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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