View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_41 (Length: 375)
Name: NF11854_low_41
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 12953166 - 12952811
Alignment:
| Q |
6 |
agaagcaaaggaagaaattggaatggtgggcttcacttgatgaggagaaagttaaaggaaagaagaataggaaaccaagggaatggtggaaggaggaatt |
105 |
Q |
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| T |
12953166 |
agaagcagaggaagaaattggaatggtgggcttcacttgatgaggagaaagttaaaggaaagaagaatagaaaaccaagggaatggtggaaggaggaatt |
12953067 |
T |
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| Q |
106 |
ttgtgaagagctttcgaagaagagtaggaagaaaaagagaagccttgattgtcgcggcaatggaggggaatcgtggtggcagagagacgaggatgtaggc |
205 |
Q |
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| T |
12953066 |
ttgtgaagagctttcgaagaagagtaggaagaaaaagagaagccttgattgtcgcggcaatggaggggaatcgtggtggcagagagacaaggatgtaggc |
12952967 |
T |
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| Q |
206 |
ggcgcagcagtagagaaaaagaaaaagaggaaaagtaagagtagtagagggagtattgattggtggttggatggtttaagcggcgagcttaggactaacg |
305 |
Q |
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| T |
12952966 |
ggcccaccattagagaagaagaaaaagaggaaaagtaagagtagtagagggagtattgattggtggttggatggtttaagcggcgagcttaggactaacg |
12952867 |
T |
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| Q |
306 |
caaggagaaatagtcaagattggggtaatggtgatataccgaagagtggtggaata |
361 |
Q |
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| T |
12952866 |
gaaggagaaatagtcaagattggggtaatggtgatataccgaagagtggtggaata |
12952811 |
T |
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