View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_42 (Length: 375)
Name: NF11854_low_42
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 64 - 359
Target Start/End: Complemental strand, 42935038 - 42934758
Alignment:
| Q |
64 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
163 |
Q |
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| T |
42935038 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
42934939 |
T |
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| Q |
164 |
gtgccaatctaagtctaattaacaactagaaaaaccagcaagaaaaattctgcaatcttaagctaatttgaaagaataaacaaattgctgctacaccttt |
263 |
Q |
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| T |
42934938 |
gtgccaatctaagtctaattaacaactagaaaaa-------------ttctgcaatcttaagctaatttgaaagaataaacaaa--gctgctacaccttt |
42934854 |
T |
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| Q |
264 |
ccaatcaatgcagtcctctgcctattcttttattactgccttgcctatcttattcacaagaccccttcatcatcaccatcaccatcactgcatatt |
359 |
Q |
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| T |
42934853 |
ccaatcaatgcagtcctctgcctattcttttattactgccttgcctatcttattcacaagaccccttcatcatcatcatcaccatcactgcatatt |
42934758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 42935093 - 42935061
Alignment:
| Q |
15 |
atgaaaaatcggaaataaacgttgttgaagccg |
47 |
Q |
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| T |
42935093 |
atgaaaaatcggaaataaacgttgttgaagccg |
42935061 |
T |
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