View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_45 (Length: 364)
Name: NF11854_low_45
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 99 - 283
Target Start/End: Complemental strand, 48952637 - 48952453
Alignment:
| Q |
99 |
ttggaatgattgtatcttctctagaaagagttaaatttctttcaagtgacgagttctagatgagttgtatctagatagattgtgatgacattgatctctt |
198 |
Q |
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| T |
48952637 |
ttggaatgattgtatcttctctagaaagagttaaatttctttcaagtgacgagttctagatgagttgtatctagatagattgtgatgacattgatctctt |
48952538 |
T |
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| Q |
199 |
gtattttatgttagtatatccgttgtgtttcctttctaatattaactcttgttgttgttgaaaatatctatattaaatgggggtg |
283 |
Q |
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| T |
48952537 |
gtattttatgttagtatatccgttatgtttcctttctaatattaactcttgttgttgttgaaaatatctatattaaatgggggtg |
48952453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 48952699 - 48952659
Alignment:
| Q |
20 |
cttagttctcccagctgatctaactattctattctcttgat |
60 |
Q |
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| T |
48952699 |
cttagttctcccagctgatctaactattctattctcttgat |
48952659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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