View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_47 (Length: 340)
Name: NF11854_low_47
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 54 - 322
Target Start/End: Original strand, 46767547 - 46767814
Alignment:
| Q |
54 |
ctccaagtaagctactgcaagatgaatacgtatgaaattaaatgatcatattattgatnnnnnnnnnttaagcaccctataagctcataatttatgtttc |
153 |
Q |
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| T |
46767547 |
ctccaagtaagctactgcaaggtgaatacgtatgaaattaaatgatcatattattgataaaaaaaa-ttaagcaccctataagctcataatttatgcttc |
46767645 |
T |
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| Q |
154 |
taaaagcagaccatttacaaaagttcctgtattttagtatagaaggaagattttacatataaatgcttgcattttctttgtcaaaaataagtttggattt |
253 |
Q |
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| T |
46767646 |
taaaagcagaacatttacaaaagttcttgtattttagtatagaaggaagattttacatataaatgcttgcattttctttgtcaaaaataagtttggattt |
46767745 |
T |
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| Q |
254 |
tgatccgtctagtcccgctgatccgtttagcaaaacagagagagaagtgacccacttgtaaaaagttcg |
322 |
Q |
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| T |
46767746 |
tgatccgtctagtcccgctgatccgtttagcaaaacagatagagaagtgacccacttgtaaaaagttcg |
46767814 |
T |
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