View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_48 (Length: 337)
Name: NF11854_low_48
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 32822705 - 32822395
Alignment:
| Q |
18 |
ttttccttatgcatatattagtttctgagctgggtccagaagatacaagcaagaacatagttgaaataatatttcactcaagctggctaaagaagcaatc |
117 |
Q |
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| T |
32822705 |
ttttccttatgcatatattagtttctgagctgggtccagaagatacaagcaagaacatagttgaaataatatttcactcaagctggctaaagaagcaatc |
32822606 |
T |
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| Q |
118 |
tcccgtctgtaaaatcgaccgcatccttaaagtccagaacacacagaaaaccataaccaagttcgaagagtacagagactcaatcaaagcaaaagcaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32822605 |
tcccgtctgtaaaatcgaccgcatccttaaagtccagaacacacagaaaaccataaccaagttcgaagagtacagagactcaatcaaagcaaaagcaaca |
32822506 |
T |
|
| Q |
218 |
aatctctcnnnnnnncatccccgctgcatagcagacggaaacgagttactaaggtttcactgcacaagctttgtttgttctttaggcctaaacggttcct |
317 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32822505 |
aatctctcaaaaaaacatccccgctgcatagcagacggaaacgagttactaaggtttcactgcacaacctttgtttgttctttaggcctaaacggttcct |
32822406 |
T |
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| Q |
318 |
caaatctctgc |
328 |
Q |
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||||||||||| |
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| T |
32822405 |
caaatctctgc |
32822395 |
T |
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