View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_49 (Length: 334)
Name: NF11854_low_49
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 4670113 - 4670447
Alignment:
| Q |
2 |
cacattctcacaactattagaatataattctgtttgttatgtttagtttaattagttaacaagtttgttataggattgcttgcttgtgaattaaccaagt |
101 |
Q |
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| T |
4670113 |
cacattctcacaactattagaatataattctgtttgttatgtttagtttaattagttaacaagtttgttataggattgcttgcttgtgaagtaaccaagt |
4670212 |
T |
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| Q |
102 |
gtaacaaactat--gctatataaataacataaactcttgtatgtccaattgtaattgaaatcatatattgaaaagcaaaagcactttccattactctcaa |
199 |
Q |
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| T |
4670213 |
gtaacaaactatatgctatataaataacataaactcttgtatgtccaattgtaattgaaatcatatattgaaaagcaaaagcactttccattactctcaa |
4670312 |
T |
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| Q |
200 |
tcacataatctctctaatctcatcct--------------ttttctctcaatttcatcaaaaaactcacctttattccaacaacaacttatactattaac |
285 |
Q |
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| T |
4670313 |
tcacataatctctctaatctcatcctttttctctctactcttttctctcaatttcatcaaaaaactcacctttattccaacaacaacttatactataaac |
4670412 |
T |
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| Q |
286 |
gataccatcacaatgttttctatagtagtgcagtt |
320 |
Q |
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| T |
4670413 |
gataccatcacaatgttttctatagtagtgcagtt |
4670447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 36360203 - 36360438
Alignment:
| Q |
18 |
ttagaatataattctgtttgttatgtttagtttaattagttaacaa------------gtttgttataggattgcttgcttgtgaattaaccaagtgtaa |
105 |
Q |
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| T |
36360203 |
ttagaatataattcagtttgttaagtttagtttagttagttaacaaaggttgttatgagtttgttatgggattgcttgcttgtgaagtaactaagtgtaa |
36360302 |
T |
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| Q |
106 |
caaactatgctatataaataacataaactcttgtatgtccaattgtaattgaaatca-------tatattgaaaagcaaaagcactttccattactctca |
198 |
Q |
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|||| ||||||||||||| | ||| ||| ||||||| ||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||| |
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| T |
36360303 |
caaagtatgctatataaaaagtatagactattgtatgcccaatagtaattgaaatcatatatattatattgagaatcaaaaacactttccattactctca |
36360402 |
T |
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| Q |
199 |
atcacataatctctctaatctcatcctttttctctc |
234 |
Q |
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| T |
36360403 |
atcacataatctttctaatcccatcccttttctctc |
36360438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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