View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_5 (Length: 857)
Name: NF11854_low_5
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Complemental strand, 26686356 - 26685735
Alignment:
| Q |
19 |
cagtgctccgatgcggtggcgatgacgtcttcgcggtgtaagaaatgagattgaatgtataaaaatgtggaaaatgaatgggttacgctgaatcaccatt |
118 |
Q |
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| T |
26686356 |
cagtgctccgatgcggtggcgatgacgtcttcgcggtgtaagaaatgagattgaatgtataaaaatgtggaaaatgaatgggttacgctgaatcaccctt |
26686257 |
T |
|
| Q |
119 |
atatagaggaagaagacactaacaaatgaaatatggcgccttcagaaagtcgttggaggccacgtgtacggtatagaatgcatggggcatgcttcaatgg |
218 |
Q |
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| T |
26686256 |
atatagaggaagaagacactaacagatgaaatatgacgccttcagaaagtcgttggag---------acagtatagaatgcatggggcatgcttcaatgg |
26686166 |
T |
|
| Q |
219 |
gggtggtgtgcaccagagttattatgcacaacgtgtcttgatgcaaatgactctttgtccatgtgtcagcatttgattggctttctagccggttaaatcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
26686165 |
gggtggtgtgcaccagagttattatgcacaacgtgtcttgatgcaaatgactctttgtccatgtgtcagcgttggattggctttctagccggttaaatcc |
26686066 |
T |
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| Q |
319 |
aacatgatgactcctatcgattcaaagaaggacaataattttccacgatattctgcaacttgatagcaaagttgctagtaattttccacgatttaaagat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26686065 |
aacatgatgactcctatcgattcaaagaaggacaataattttccacgatattctgcaacttgatagcaaagttgctagtaattttccacgatttaaagat |
26685966 |
T |
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| Q |
419 |
ctcacattcagtgaactga-nnnnnnnctctcgttagcagtgctagtaattttttatacacagtatttgcaatgaaagtattgtgctccgttgattttca |
517 |
Q |
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| T |
26685965 |
ctcacattcagtgaactgattttttttctcttgttagcagtgctagtaatcttttatacacagtatttgcaatgaaagtattgtgctccgttgattttca |
26685866 |
T |
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| Q |
518 |
gcaaacatgcgcctggttttcatcaaagaaggacatgataatttttagcttgtcaaagaacatgaaacatacatatttttgcttttcttctgttaatttt |
617 |
Q |
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| T |
26685865 |
gcaaacatgcgcctggttttcatcaaagaaggacatgataatttttagcttgtcaaagaacatgaaacatacatatttttgcttttcttgtgttaattct |
26685766 |
T |
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| Q |
618 |
taatatctagcactgctataaaagtaataat |
648 |
Q |
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| T |
26685765 |
taatatctagcactgctataaaagtaataat |
26685735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 713 - 803
Target Start/End: Complemental strand, 26685670 - 26685580
Alignment:
| Q |
713 |
aaattgtactattagaaaattaccacatcgctgtaaattttgtaatatagtaagggactacttcgggaaaatttagataacactggatata |
803 |
Q |
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| T |
26685670 |
aaattgtactattagaaaattaccacatcgctgtaaattttgtaatatagtaagggactacttcgggaaaatttagataacactcgatata |
26685580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 599
Target Start/End: Complemental strand, 33955756 - 33955696
Alignment:
| Q |
538 |
catcaaagaaggacatgataatttttagcttgtcaaagaacatgaaacatacatatttttgc |
599 |
Q |
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| T |
33955756 |
catcaaataaggacatgataattcttagcttgtccaa-aacatgacacgtacatattcttgc |
33955696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 497 - 618
Target Start/End: Complemental strand, 17574163 - 17574043
Alignment:
| Q |
497 |
attgtgctccgttgattttcagcaaacatgcgcctggttttcatcaaagaaggacatgataatttttagcttgtcaaagaacatgaaacatacatatttt |
596 |
Q |
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| T |
17574163 |
attgtactccgttgattttctgcaaacatgcgcctgatttccaccaaataaggacatgataattctcagcttgtgcaa-aacatgacacgtacatatttt |
17574065 |
T |
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| Q |
597 |
tgcttttcttctgttaattttt |
618 |
Q |
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| T |
17574064 |
tgcttttcttgtgctaattttt |
17574043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 498 - 615
Target Start/End: Original strand, 13509414 - 13509532
Alignment:
| Q |
498 |
ttgtgctccgttgattttcagcaaa--catgcgcctggttttcatcaaagaaggacatgataatttttagcttgtcaaagaacatgaaacatacatattt |
595 |
Q |
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| T |
13509414 |
ttgtactccgttgattttcaccacaaccatgtgtctgatttccgtcaaagacggacatgataatttttagcttatctta-aacatgacacatacacatcc |
13509512 |
T |
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| Q |
596 |
ttgcttttcttctgttaatt |
615 |
Q |
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| T |
13509513 |
ttgcttttcttgtgttaatt |
13509532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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