View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_51 (Length: 325)
Name: NF11854_low_51
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 37375235 - 37374938
Alignment:
| Q |
19 |
tcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataagaacttttgttttagattgtctctctgaatttgcttattttaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375235 |
tcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataagaacttttgttttagattgtctctctgaatttgcttattttaaag |
37375136 |
T |
|
| Q |
119 |
ttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataa----atagatgataaagttatagcagaaaatcaaaataataccgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375135 |
ttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataaatatatagatgataaagttatagcagaaaatcaaaataataccgt |
37375036 |
T |
|
| Q |
215 |
tgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375035 |
tgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttct |
37374938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 37382574 - 37382280
Alignment:
| Q |
19 |
tcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataagaacttttgttttagatt----gtctctctgaatttgcttatttt |
114 |
Q |
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||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| || |||||| |||||| ||||||||| |
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| T |
37382574 |
tcgaccagattcttgataagcagcaccctaggaaatcacgtgaaaaggtcaataagaacttttgttttaggttacgtgtctctttgaattggcttatttt |
37382475 |
T |
|
| Q |
115 |
aaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataaatagatgataaagttatagcagaaaatcaaaataataccgt |
214 |
Q |
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|| | ||||||||||||| ||| ||| |||||| ||||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |
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| T |
37382474 |
gaattcgcttatttgagtttatccacttacatacatgtgaatttataatacagaattaaattgaagataaagttatagcagagaatcaaaataataccgt |
37382375 |
T |
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| Q |
215 |
tgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttct |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||| ||||||| |
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| T |
37382374 |
tg---tatctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacatgaattccaaatttcaaacctaagctatgtactttct |
37382280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 91 - 312
Target Start/End: Complemental strand, 37360339 - 37360116
Alignment:
| Q |
91 |
tgtctctctgaatttgcttattttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataaata--gatgataaagtt |
188 |
Q |
| |
|
||||||| |||||| |||||||| || ||||||||| ||||| ||||||||| |||||||||||| |||||| |||||||| ||| || ||||||||| |
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| T |
37360339 |
tgtctctttgaattgccttattttgaaattgcttattcgagtttatctactgatatacttgtgaatgtataatgcataaatatatatagaagataaagtt |
37360240 |
T |
|
| Q |
189 |
atagcagaaaatcaaaataataccgttgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaact |
288 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360239 |
atagcagaaaatcaaaataataccgttgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaact |
37360140 |
T |
|
| Q |
289 |
ttaaacctaagctatgcactttct |
312 |
Q |
| |
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| |||||||||||||| ||||||| |
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| T |
37360139 |
tcaaacctaagctatgtactttct |
37360116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 91 - 312
Target Start/End: Original strand, 37367725 - 37367948
Alignment:
| Q |
91 |
tgtctctctgaatttgcttattttaaagttgcttatttgagttaatctactgacatacttgtgaatttataatacataaataaata--gatgataaagtt |
188 |
Q |
| |
|
||||||| |||||| |||||||| || ||||||||| ||||| ||||||||| ||||||||| || |||||| |||||||| ||| || ||||||||| |
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| T |
37367725 |
tgtctctttgaattgccttattttgaaattgcttattcgagtttatctactgatatacttgtgtatgtataatgcataaatatatatagaagataaagtt |
37367824 |
T |
|
| Q |
189 |
atagcagaaaatcaaaataataccgttgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaact |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367825 |
atagcagaaaatcaaaataataccgttgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaact |
37367924 |
T |
|
| Q |
289 |
ttaaacctaagctatgcactttct |
312 |
Q |
| |
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| |||||||||||||| ||||||| |
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| T |
37367925 |
tcaaacctaagctatgtactttct |
37367948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 37360418 - 37360363
Alignment:
| Q |
19 |
tcgaccaagttcttgataagcagcaccctagtatatcacaagaaaaggtcaataag |
74 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
37360418 |
tcgaccagattcttgataagcagcaccctgtgatatcgcaagaaaaggtcaataag |
37360363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 37367653 - 37367699
Alignment:
| Q |
28 |
ttcttgataagcagcaccctagtatatcacaagaaaaggtcaataag |
74 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
37367653 |
ttcttgataagcagcaccctgtgatatcgcaagaaaaggtcaataag |
37367699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 312
Target Start/End: Original strand, 41230174 - 41230328
Alignment:
| Q |
159 |
ataatacataaataaatagatgataaagttatagcagaaaatcaaaataa-taccgttgctgtatctaggataggggtgtttgcattcacagcttgtgtg |
257 |
Q |
| |
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|||||||| ||||||||||| ||| |||||| | || ||| |||| || |||| ||| ||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
41230174 |
ataatacagaaataaatagaagatcaagttaaatcaaaaatgcaaaccaaatacctttgatgtatctagaataggggtatttgcatccacagcttgtgtg |
41230273 |
T |
|
| Q |
258 |
ctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttct |
312 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41230274 |
cttatccctctcataatatgaattccaaactttaaacctaagctatgtactttct |
41230328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 39243545 - 39243446
Alignment:
| Q |
209 |
taccgttgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaagctatgcact |
308 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| | | |||||||| |
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| T |
39243545 |
taccgttgttgtatctaggataggcgtgtttgcattgacagcttgtgtgcttatccctctcataacatgaatcccaaactttaaacccatgttatgcact |
39243446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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