View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_53 (Length: 317)
Name: NF11854_low_53
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 3216903 - 3217198
Alignment:
| Q |
17 |
agttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcaga |
116 |
Q |
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| T |
3216903 |
agttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcaga |
3217002 |
T |
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| Q |
117 |
aaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217003 |
aaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaac |
3217102 |
T |
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| Q |
217 |
cccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttct |
312 |
Q |
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| T |
3217103 |
cccaagaagcttggtgtgtgagttgtatgtaatgagaggatgttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttct |
3217198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 3202982 - 3203276
Alignment:
| Q |
18 |
gttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaa |
117 |
Q |
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| T |
3202982 |
gttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaa |
3203081 |
T |
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| Q |
118 |
aaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaacc |
217 |
Q |
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| T |
3203082 |
aaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttgcaacc |
3203181 |
T |
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| Q |
218 |
ccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttct |
312 |
Q |
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| T |
3203182 |
ccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 3208958 - 3209249
Alignment:
| Q |
20 |
tccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaa |
119 |
Q |
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| T |
3208958 |
tccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaa |
3209057 |
T |
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| Q |
120 |
ggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaacccc |
219 |
Q |
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| T |
3209058 |
ggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaacccc |
3209157 |
T |
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| Q |
220 |
aagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagcctttgcttc |
311 |
Q |
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|||||||||| ||||||||||| ||||||||| || || || | ||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
3209158 |
aagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttc |
3209249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 3177934 - 3177882
Alignment:
| Q |
62 |
tgaattcacagtggccattccattttgcaggtggagagggcattccctcgtca |
114 |
Q |
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| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattccttcgtca |
3177882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 3232106 - 3232158
Alignment:
| Q |
61 |
gtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtc |
113 |
Q |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtggcggcattccttcgtc |
3232158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 3240906 - 3240958
Alignment:
| Q |
62 |
tgaattcacagtggccattccattttgcaggtggagagggcattccctcgtca |
114 |
Q |
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| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattccttcgtca |
3240958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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