View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_56 (Length: 315)

Name: NF11854_low_56
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_56
NF11854_low_56
[»] chr2 (1 HSPs)
chr2 (2-297)||(40998049-40998346)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 40998049 - 40998346
Alignment:
Q  2 catttacaaaattcggtccaacttacttaactagctcaatcctggatttttactggtttaaacgattttagtttggttttt-ctca-gttcttttgttac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  40998049 catttacaaaattcggtccaacttacttaactagctcaatcgtggattttgactggtttaaacgattttagtttggttttttctcaagttcttttgttac 40998148  T
Q  100 cttgctatcgtctatttatgtagaaaaagttacttttattacctctatagttttaacaattctactaaatgcatagacatatcatcacttagattgatca 199  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40998149 cttgctatcgtctatttatgtagaaaaagttatttttattacctctatagttttaacaattctactaaatgcatagacagatcatcacttagattgatca 40998248  T
Q  200 attcgatcttattttcattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttcccccactctcaaccctcgccgt 297  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998249 attcgatcttatttttattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttcccccactctcaaccctcgccgt 40998346  T

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