View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_58 (Length: 313)

Name: NF11854_low_58
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_58
NF11854_low_58
[»] chr3 (31 HSPs)
chr3 (1-300)||(54520701-54521000)
chr3 (9-214)||(12305102-12305318)
chr3 (209-303)||(3803096-3803190)
chr3 (209-303)||(11850384-11850478)
chr3 (1-173)||(29544826-29544978)
chr3 (229-305)||(23395821-23395897)
chr3 (235-305)||(13523178-13523248)
chr3 (229-305)||(20417293-20417369)
chr3 (235-298)||(17548318-17548381)
chr3 (235-305)||(10550483-10550553)
chr3 (235-305)||(18367525-18367595)
chr3 (230-303)||(6158612-6158685)
chr3 (230-305)||(42324985-42325060)
chr3 (235-305)||(3394769-3394839)
chr3 (235-305)||(13520548-13520618)
chr3 (235-305)||(14818239-14818309)
chr3 (230-303)||(37038033-37038106)
chr3 (230-305)||(11886435-11886511)
chr3 (230-294)||(14642314-14642378)
chr3 (238-305)||(12275813-12275880)
chr3 (246-305)||(14250895-14250954)
chr3 (238-305)||(52338735-52338802)
chr3 (230-303)||(12512582-12512655)
chr3 (235-305)||(52213244-52213314)
chr3 (1-62)||(38311802-38311863)
chr3 (229-305)||(19569084-19569160)
chr3 (242-305)||(179481-179544)
chr3 (229-299)||(11192158-11192228)
chr3 (229-299)||(11192348-11192418)
chr3 (239-305)||(35065346-35065414)
chr3 (239-305)||(41173137-41173205)
[»] chr4 (29 HSPs)
chr4 (1-303)||(49547758-49548060)
chr4 (1-226)||(14048531-14048755)
chr4 (1-226)||(15534121-15534359)
chr4 (1-173)||(36037864-36038048)
chr4 (229-303)||(2584972-2585046)
chr4 (110-179)||(33198527-33198596)
chr4 (235-303)||(13446669-13446737)
chr4 (235-305)||(4615833-4615903)
chr4 (229-303)||(6511791-6511865)
chr4 (236-302)||(21061743-21061810)
chr4 (230-305)||(51992736-51992811)
chr4 (235-302)||(20899527-20899594)
chr4 (235-305)||(14933208-14933278)
chr4 (235-305)||(27027950-27028020)
chr4 (139-226)||(14063197-14063281)
chr4 (235-305)||(14942414-14942484)
chr4 (235-305)||(15448178-15448248)
chr4 (1-78)||(16043038-16043113)
chr4 (230-305)||(9871330-9871405)
chr4 (229-299)||(14630093-14630163)
chr4 (108-162)||(33198565-33198619)
chr4 (230-287)||(9638238-9638295)
chr4 (242-294)||(18229883-18229935)
chr4 (229-299)||(14629903-14629973)
chr4 (189-230)||(27028037-27028078)
chr4 (229-278)||(32467070-32467119)
chr4 (235-299)||(10704719-10704783)
chr4 (235-299)||(10918489-10918553)
chr4 (8-48)||(32307022-32307061)
[»] chr7 (32 HSPs)
chr7 (1-226)||(16108673-16108919)
chr7 (1-226)||(11303187-11303425)
chr7 (1-106)||(29796681-29796786)
chr7 (1-106)||(29800500-29800605)
chr7 (1-106)||(23664937-23665042)
chr7 (229-303)||(3289583-3289657)
chr7 (110-179)||(46173782-46173851)
chr7 (235-305)||(8757163-8757233)
chr7 (235-305)||(40555510-40555580)
chr7 (229-305)||(11053845-11053921)
chr7 (242-305)||(33001175-33001239)
chr7 (230-305)||(10660023-10660098)
chr7 (230-305)||(36705432-36705507)
chr7 (230-305)||(47094293-47094368)
chr7 (238-303)||(832793-832858)
chr7 (238-303)||(1197973-1198038)
chr7 (230-303)||(17071051-17071124)
chr7 (242-297)||(21735276-21735331)
chr7 (229-299)||(15096446-15096516)
chr7 (242-297)||(13407995-13408050)
chr7 (235-294)||(14191856-14191915)
chr7 (1-62)||(10896730-10896791)
chr7 (1-62)||(15167242-15167303)
chr7 (235-287)||(19558092-19558144)
chr7 (189-220)||(14161645-14161676)
chr7 (244-294)||(836857-836907)
chr7 (244-294)||(1202037-1202087)
chr7 (229-287)||(13133128-13133186)
chr7 (189-230)||(43277529-43277571)
chr7 (235-287)||(20253422-20253475)
chr7 (235-302)||(17130510-17130578)
chr7 (239-305)||(46386853-46386921)
[»] chr2 (11 HSPs)
chr2 (1-226)||(20261159-20261397)
chr2 (1-106)||(10684749-10684854)
chr2 (230-305)||(25045218-25045293)
chr2 (235-298)||(6478067-6478130)
chr2 (230-298)||(18389061-18389129)
chr2 (229-299)||(3538960-3539030)
chr2 (1-62)||(6482795-6482856)
chr2 (1-62)||(6486262-6486323)
chr2 (229-305)||(27860499-27860575)
chr2 (229-305)||(44071706-44071782)
chr2 (189-230)||(27851879-27851920)
[»] chr6 (19 HSPs)
chr6 (1-214)||(12942155-12942379)
chr6 (209-303)||(5110504-5110598)
chr6 (209-303)||(5289863-5289957)
chr6 (234-303)||(24266982-24267051)
chr6 (189-305)||(31735632-31735761)
chr6 (235-298)||(19444049-19444112)
chr6 (229-305)||(29848266-29848342)
chr6 (235-298)||(16133439-16133502)
chr6 (235-305)||(610955-611025)
chr6 (235-305)||(13751121-13751191)
chr6 (235-305)||(13764565-13764635)
chr6 (239-305)||(24441140-24441206)
chr6 (235-300)||(18658426-18658491)
chr6 (1-84)||(28289319-28289403)
chr6 (235-305)||(22212275-22212346)
chr6 (230-287)||(19829716-19829773)
chr6 (230-305)||(24551045-24551117)
chr6 (235-299)||(23492082-23492146)
chr6 (235-299)||(23497680-23497744)
[»] chr5 (14 HSPs)
chr5 (113-226)||(37805042-37805157)
chr5 (209-303)||(41876290-41876384)
chr5 (1-106)||(9776431-9776536)
chr5 (1-82)||(37804887-37804968)
chr5 (108-184)||(42242247-42242323)
chr5 (235-303)||(8952817-8952885)
chr5 (235-299)||(17812617-17812681)
chr5 (230-305)||(10953187-10953262)
chr5 (235-299)||(24277373-24277437)
chr5 (235-299)||(24384776-24384840)
chr5 (240-302)||(25250662-25250725)
chr5 (240-302)||(25314447-25314510)
chr5 (229-287)||(20565833-20565891)
chr5 (1-62)||(22750221-22750282)
[»] scaffold1427 (1 HSPs)
scaffold1427 (1-106)||(1501-1606)
[»] scaffold0326 (1 HSPs)
scaffold0326 (209-303)||(113-207)
[»] scaffold0506 (1 HSPs)
scaffold0506 (108-226)||(8699-8817)
[»] chr8 (27 HSPs)
chr8 (110-184)||(29327668-29327742)
chr8 (122-226)||(21322046-21322150)
chr8 (122-226)||(21326634-21326738)
chr8 (235-305)||(22584502-22584572)
chr8 (229-305)||(23947414-23947491)
chr8 (229-302)||(23888942-23889015)
chr8 (189-305)||(17907678-17907807)
chr8 (230-305)||(39695292-39695367)
chr8 (235-305)||(20454454-20454524)
chr8 (229-305)||(22244617-22244694)
chr8 (251-305)||(17217802-17217857)
chr8 (235-294)||(20455222-20455281)
chr8 (235-294)||(20460200-20460259)
chr8 (235-294)||(19882191-19882250)
chr8 (1-59)||(2418891-2418949)
chr8 (229-299)||(22318716-22318786)
chr8 (230-304)||(25849210-25849284)
chr8 (229-299)||(31723370-31723440)
chr8 (9-62)||(8728672-8728725)
chr8 (8-44)||(22419439-22419475)
chr8 (230-302)||(23418545-23418617)
chr8 (1-57)||(35026880-35026936)
chr8 (235-305)||(42266361-42266432)
chr8 (229-287)||(20025043-20025101)
chr8 (108-157)||(29327716-29327765)
chr8 (1-62)||(44476710-44476771)
chr8 (1-62)||(44479972-44480033)
[»] chr1 (23 HSPs)
chr1 (108-226)||(19778232-19778350)
chr1 (229-305)||(18275130-18275206)
chr1 (235-305)||(18823821-18823891)
chr1 (235-298)||(13528561-13528624)
chr1 (235-304)||(52983361-52983430)
chr1 (229-305)||(18270476-18270552)
chr1 (230-305)||(19761989-19762064)
chr1 (230-305)||(38057415-38057490)
chr1 (235-294)||(51476202-51476261)
chr1 (235-305)||(21181092-21181162)
chr1 (241-305)||(7792625-7792689)
chr1 (235-299)||(10813290-10813354)
chr1 (230-306)||(8276754-8276830)
chr1 (239-305)||(42696935-42697002)
chr1 (235-305)||(44822888-44822958)
chr1 (235-299)||(21240017-21240081)
chr1 (230-294)||(22349812-22349876)
chr1 (235-305)||(16400882-16400953)
chr1 (235-305)||(45754670-45754741)
chr1 (239-305)||(20587896-20587964)
chr1 (239-305)||(20592434-20592502)
chr1 (239-305)||(20634401-20634469)
chr1 (273-305)||(24726539-24726571)
[»] scaffold0422 (1 HSPs)
scaffold0422 (1-82)||(3120-3201)
[»] scaffold0273 (1 HSPs)
scaffold0273 (229-305)||(6835-6911)
[»] scaffold0188 (1 HSPs)
scaffold0188 (235-305)||(404-474)
[»] scaffold0004 (1 HSPs)
scaffold0004 (229-294)||(59569-59634)
[»] scaffold0309 (2 HSPs)
scaffold0309 (230-305)||(6121-6196)
scaffold0309 (230-305)||(8273-8348)
[»] scaffold1419 (1 HSPs)
scaffold1419 (1-58)||(67-124)
[»] scaffold0790 (1 HSPs)
scaffold0790 (1-70)||(6067-6136)
[»] scaffold0321 (1 HSPs)
scaffold0321 (230-303)||(766-839)
[»] scaffold0065 (1 HSPs)
scaffold0065 (238-303)||(53406-53471)
[»] scaffold0413 (1 HSPs)
scaffold0413 (229-305)||(10891-10967)
[»] scaffold0181 (1 HSPs)
scaffold0181 (229-293)||(34152-34216)
[»] scaffold0962 (1 HSPs)
scaffold0962 (235-302)||(1296-1363)
[»] scaffold0630 (1 HSPs)
scaffold0630 (230-305)||(8277-8352)
[»] scaffold0490 (1 HSPs)
scaffold0490 (230-305)||(5039-5114)
[»] scaffold0429 (1 HSPs)
scaffold0429 (235-302)||(2757-2824)
[»] scaffold0220 (3 HSPs)
scaffold0220 (230-305)||(15977-16052)
scaffold0220 (230-294)||(13170-13234)
scaffold0220 (235-302)||(17627-17695)
[»] scaffold0149 (1 HSPs)
scaffold0149 (230-305)||(20862-20937)
[»] scaffold0007 (1 HSPs)
scaffold0007 (230-305)||(159714-159789)
[»] scaffold2046 (1 HSPs)
scaffold2046 (235-305)||(325-395)
[»] scaffold0453 (1 HSPs)
scaffold0453 (235-305)||(3250-3320)
[»] scaffold0117 (1 HSPs)
scaffold0117 (235-305)||(40992-41062)
[»] scaffold0107 (1 HSPs)
scaffold0107 (235-305)||(3093-3163)
[»] scaffold0108 (1 HSPs)
scaffold0108 (230-305)||(5630-5705)
[»] scaffold0083 (3 HSPs)
scaffold0083 (239-305)||(706-773)
scaffold0083 (239-305)||(6010-6077)
scaffold0083 (256-305)||(11494-11544)
[»] scaffold0010 (2 HSPs)
scaffold0010 (239-305)||(127187-127254)
scaffold0010 (189-224)||(127127-127162)
[»] scaffold0607 (1 HSPs)
scaffold0607 (235-305)||(2921-2991)
[»] scaffold0008 (2 HSPs)
scaffold0008 (235-305)||(12277-12347)
scaffold0008 (229-286)||(136378-136435)
[»] scaffold0328 (1 HSPs)
scaffold0328 (230-303)||(19408-19481)
[»] scaffold0056 (1 HSPs)
scaffold0056 (229-305)||(66226-66302)
[»] scaffold0070 (1 HSPs)
scaffold0070 (242-305)||(8272-8335)
[»] scaffold1186 (2 HSPs)
scaffold1186 (229-299)||(978-1048)
scaffold1186 (229-299)||(788-858)
[»] scaffold0371 (1 HSPs)
scaffold0371 (229-287)||(16837-16895)
[»] scaffold0338 (1 HSPs)
scaffold0338 (235-305)||(3712-3782)
[»] scaffold0005 (2 HSPs)
scaffold0005 (229-299)||(187220-187290)
scaffold0005 (229-299)||(187410-187480)
[»] scaffold0126 (1 HSPs)
scaffold0126 (242-298)||(6021-6077)
[»] scaffold0123 (1 HSPs)
scaffold0123 (242-290)||(2052-2100)
[»] scaffold0042 (2 HSPs)
scaffold0042 (239-305)||(28493-28560)
scaffold0042 (189-230)||(28580-28620)
[»] scaffold0002 (1 HSPs)
scaffold0002 (230-305)||(397709-397784)
[»] scaffold0116 (1 HSPs)
scaffold0116 (268-305)||(36340-36377)
[»] scaffold1662 (1 HSPs)
scaffold1662 (239-305)||(187-255)
[»] scaffold0737 (1 HSPs)
scaffold0737 (239-305)||(5479-5547)
[»] scaffold0445 (1 HSPs)
scaffold0445 (267-299)||(2733-2765)
[»] scaffold0308 (1 HSPs)
scaffold0308 (230-294)||(12558-12622)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 54521000 - 54520701
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54521000 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatgttggt 54520901  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54520900 taatatgttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggttggtgttggttaatg 54520801  T
Q  201 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54520800 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtct 54520701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 12305318 - 12305102
Alignment:
Q  9 tgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggttaatatct 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  |||||| | | | |  |    
T  12305318 tgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttgatta-aagt 12305220  T
Q  109 tggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctggtgttggtt 196  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||||||||||    
T  12305219 gggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctggtgttggtt 12305120  T
Q  197 aatgtgaaatatatatat 214  Q
    ||||||||||||||||||    
T  12305119 aatgtgaaatatatatat 12305102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 3803190 - 3803096
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3803190 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtctctg 3803096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 11850384 - 11850478
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11850384 atatattatgtggaaaatgtatattgttgtttatatcattctagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtctctg 11850478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 29544826 - 29544978
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||| |||||||||||||        ||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||| |||||    
T  29544826 tttgatgttgttatgtcttgagattgtt--------gccatgttactagttattattgattaggatgcatatgttggttaatgttgtgggaaatgttggt 29544917  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttg 173  Q
    |||||            ||| ||||||||||||||| |||| ||||||||||||||||||||| || ||||||    
T  29544918 taata------------tttgattaaagtgggttaatgtttaattaaagttggttaatatttaagtaacgttg 29544978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 23395821 - 23395897
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  23395821 atattgttgtttatatcattcgagttgttattattaacgttgttatattgcaagttgtttatgttgttgtctctgct 23395897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 13523178 - 13523248
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  13523178 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgtttatgttgctgtctctgct 13523248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 20417369 - 20417293
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||||||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||| ||||||||||    
T  20417369 atattgttgtttatatcattcaagttgttattattaatattgatatgttgcaagttgtttatgttgttgtctctgct 20417293  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 17548318 - 17548381
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  17548318 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaagttgcttatgttgctgt 17548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 10550553 - 10550483
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||| ||||    
T  10550553 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtctttgct 10550483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 18367525 - 18367595
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  ||| |||||||||||||| |||||||||||||||||||    
T  18367525 ttgtttatatcattcaagttgttattattaatattgttatgttgcaagttgcttatgttgctgtctctgct 18367595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 6158685 - 6158612
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||||||| ||||    
T  6158685 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgctgtttctg 6158612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 42324985 - 42325060
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  42324985 tattattgtttatatcattcaagttgttattattcatgttgctatgttgcaagatgtttatgttgatgtttctgct 42325060  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 3394769 - 3394839
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||| ||||||    
T  3394769 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtttctgct 3394839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 13520548 - 13520618
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| | ||||| |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  13520548 ttgtttatatcattcaaattgttattattaatattgctatgttgcaagttgcttatgttgttgtctctgct 13520618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 14818309 - 14818239
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  ||||| | |||||||||| |||||||||||||||||||    
T  14818309 ttgtttatatcattcaagttgttattattaatattgctgtattgcaagttgcttatgttgctgtctctgct 14818239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 37038106 - 37038033
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||| ||||||||||||||| | ||||| ||||| | |||||||||||||||| ||||||||||||||| ||||    
T  37038106 tattattgtttatatcattcaaattgttattattgatgttgctatgttgcaagatgtttatgttgctgtttctg 37038033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 11886435 - 11886511
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    |||| |||||||||||||   |||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  11886435 tattattgtttatatcatctaagttgttagtattaacgtggctatgttgcaagttgctttatgttgctgtctctgct 11886511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 14642314 - 14642378
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| |||||||||||    
T  14642314 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttg 14642378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 12275880 - 12275813
Alignment:
Q  238 tttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||||||| ||||||| |||||||  |||||||||| ||||||| |||||||||||| ||||||    
T  12275880 tttatatcattcaagttgttattattaatattgctatgtttcaagttgcttatgttgctgtttctgct 12275813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 14250895 - 14250954
Alignment:
Q  246 attcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  14250895 attcaagttgttattattgatgttgctatgttgcaagatgtttatgttgctgtctctgct 14250954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 52338735 - 52338802
Alignment:
Q  238 tttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||| |||  ||| ||||||||||    
T  52338735 tttatatcattcaagttgttgttattaatattgctatgttgcaagttgattaaattgatgtctctgct 52338802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 12512582 - 12512655
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||| ||||||||||||||| ||||||| || || | |||||||||||||||| |||||||||| || ||||||    
T  12512582 tattattgtttatatcattcaagttgttattgttgatgttgctatgttgcaagatgtttatgtttctatctctg 12512655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 52213244 - 52213314
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| | ||||| ||||| | |||||||| |||||||||| |||||||| ||| ||||||    
T  52213244 ttgtttatatcattcaaattgttattattgaagttgctattttgcaagttgcttatgttgttgtttctgct 52213314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38311802 - 38311863
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  38311802 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 38311863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 19569084 - 19569160
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||||| |||| ||| | |||| |||| |||| |||||||||||  ||||||||||||||||    
T  19569084 atattgttgttcatatcattcaagttattgctgttaatgttgttatgatgcaagttgttattgttgctgtctctgct 19569160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 179481 - 179544
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||| |||||||  ||||||  |||||||||||||||||| |||||||| ||| ||||||    
T  179481 tatcattcaagttgttactattaatattgctatgttgcaagttgcttatgttgttgtttctgct 179544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 11192228 - 11192158
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||| | |||| |||| |||| |||||||||||  ||||||||||    
T  11192228 atattattgttcatatcattcaagttgttgctgttaatgttgttatgatgcaagttgttattgttgctgtc 11192158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 11192418 - 11192348
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||| | |||| |||| |||| |||||||||||  ||||||||||    
T  11192418 atattgttgttcatatcattcaagttgttgctgttaatgttgttatgatgcaagttgttattgttgctgtc 11192348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 35065346 - 35065414
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttg-caagttgtt-tatgttgctgtctctgct 305  Q
    ||||||||||| ||||||| ||||||| | ||||||||||  |||||||| ||||||| ||||||||||    
T  35065346 ttatatcattcaagttgttattattaatgatgctatgttgtgaagttgttgtatgttgttgtctctgct 35065414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 41173137 - 41173205
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttg-caagttgtt-tatgttgctgtctctgct 305  Q
    ||||||||||| ||||||| ||||||| | ||||||||||  |||||||| ||||||| ||||||||||    
T  41173137 ttatatcattcaagttgttattattaatgatgctatgttgtgaagttgttgtatgttgttgtctctgct 41173205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 49547758 - 49548060
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  49547758 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatcttttggttaatgtggtggaaaatgttggt 49547857  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatg 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49547858 taatatgttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggttggtgttggttaatg 49547957  T
Q  201 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49547958 tgaaatatatatattatgtggaaaatgtatattcttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtct 49548057  T
Q  301 ctg 303  Q
    |||    
T  49548058 ctg 49548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14048755 - 14048531
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||| ||||||||||| |  |||  |||||| |     
T  14048755 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttgctgtttattaatgattaagctgcatatgttggttaatatgttggttaatatttga 14048656  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatg 200  Q
    | | |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14048655 ttaaag-tgggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaatgttggctggtgttggttaatg 14048557  T
Q  201 tgaaatatatatattatgtggaaaat 226  Q
    |||||||||| |||||||||||||||    
T  14048556 tgaaatatatgtattatgtggaaaat 14048531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15534359 - 15534121
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  15534359 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 15534260  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||    
T  15534259 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctgg 15534161  T
Q  189 tgttggttaatgtgaa--atatatatattatgtggaaaat 226  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  15534160 tgttggttaatgtgaaatatatatatattatgtggaaaat 15534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 36038048 - 36037864
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggt------------taatgttgtg 88  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||||            ||||||||||    
T  36038048 tttgatgttgttatatcttgagattgtttgtgtgctgccatgtcgctgtttattattgattaagctgcatatgttggttaatatattggctaatgttgtg 36037949  T
Q  89 gaaaatattggttaatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttg 173  Q
    |  ||| ||||||||||  ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  36037948 ggtaatgttggttaataagttggttaatatttaattaaagtgggttaatgtttaattaaagttggttaatatttaggtaacgttg 36037864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 2584972 - 2585046
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2584972 atattgttgtttatatcattcgagttgttattattaacgttgttatgttgcaagttgtttatgttgctgtctctg 2585046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 33198596 - 33198527
Alignment:
Q  110 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaat 179  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  33198596 ggttaatgtttaattaaagtgggttaatatttgattaaagttggttaatatttaggtgacgttggttaat 33198527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 13446737 - 13446669
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  13446737 ttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgcttatgttgttgtctctg 13446669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 4615833 - 4615903
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||||||||    
T  4615833 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtctctgct 4615903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 6511865 - 6511791
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| || |||||    
T  6511865 atattgttgtttatatcattcgagttgttattattaacgttgctatatttcaagttgtttatgttgttgcctctg 6511791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 21061810 - 21061743
Alignment:
Q  236 tgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctct 302  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  21061810 tgtttatatcattcaagttgttgttattaatgttgctatgttgcaagttgttttatgttgttgtctct 21061743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 51992811 - 51992736
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| || || | |||||||||||||||| ||||||||||||||||||||||    
T  51992811 tattattgtttatatcattcaagttgttattgttgatgttgctatgttgcaagatgtttatgttgctgtctctgct 51992736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 20899527 - 20899594
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctct 302  Q
    ||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||||| |||||||    
T  20899527 ttgtttatatcattcaagttgttgttattaatattgttatgttgcaagttgcttatgttgttgtctct 20899594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 14933208 - 14933278
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||| ||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||| ||||||    
T  14933208 ttgtttacatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtttctgct 14933278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 27028020 - 27027950
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||| ||||||    
T  27028020 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtttctgct 27027950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 14063281 - 14063197
Alignment:
Q  139 tttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaatatatatattatgtggaaaat 226  Q
    |||||||||||| ||||||||||||  | | ||||| ||||||    ||||||||||||||||||||||||| |||||||||||||||    
T  14063281 tttgattaaagtgggttaatatttatttaatgttggttaatgta---tggtgttggttaatgtgaaatatatgtattatgtggaaaat 14063197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 14942414 - 14942484
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||| ||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||| ||||||    
T  14942414 ttgtttacatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtttctgct 14942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 15448178 - 15448248
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| |||| || |||||||  || ||||||||||||||| |||||||| ||||||||||    
T  15448178 ttgtttatatcattcaagtttttattattaatatttctatgttgcaagttgcttatgttgttgtctctgct 15448248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16043113 - 16043038
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggt 78  Q
    ||||||||||||||||||||||||   ||||||||||||||||| ||| | | ||||||||||| ||||| |||||||    
T  16043113 tttgatgttgttatatcttgagatg--ttgtgtgctgccatgttgctgttgactattgattaagctgcatatgttggt 16043038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 9871330 - 9871405
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| |||||||||||| || ||||||| ||||| | ||| |||||||||||| ||||||||||| ||| ||||||    
T  9871330 tattattgtttatatcagtcaagttgttattattgatgtttctatgttgcaagatgtttatgttgttgtttctgct 9871405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 14630163 - 14630093
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| || | |||| ||||||||||||||||  ||||||||||    
T  14630163 atattgttgttcatatcattcaagttgttgttgttgatgttgttatgttgcaagttgttattgttgctgtc 14630093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 33198619 - 33198565
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatattt 162  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||| |||||||||||    
T  33198619 ttggttaatatttgattaaagtgggttaatgtttaattaaagtgggttaatattt 33198565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 9638295 - 9638238
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||    
T  9638295 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtt 9638238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 18229935 - 18229883
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||||||| |||||||  ||||||  |||||||||||||||||||||||||||    
T  18229935 tatcattcaagttgttaatattaatattgctatgttgcaagttgtttatgttg 18229883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 14629973 - 14629903
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||||||||||||| |||||||  | |||| |||| |||| |||||||||||  ||||||||||    
T  14629973 atattattgtttatatcattcaagttgttcctgttaatgttgttatgatgcaagttgttattgttgctgtc 14629903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 27028078 - 27028037
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||| | || |||||||||||||||||||||||||    
T  27028078 tgttggttaatttaaactatatatattatgtggaaaatgtat 27028037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 32467070 - 32467119
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttg 278  Q
    ||||| ||||||||||||||| || ||||||||| || ||||||||||||    
T  32467070 atattattgtttatatcattcaagctgttgttatcaatgttgctatgttg 32467119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 10704783 - 10704719
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    |||||||||| |||| ||||||| |||||||  ||| |||||||||||||| || ||||| ||||    
T  10704783 ttgtttatataattcaagttgttattattaatattgttatgttgcaagttgcttttgttgttgtc 10704719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 10918553 - 10918489
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    |||||||||| |||| ||||||| |||||||  ||| |||||||||||||| || ||||| ||||    
T  10918553 ttgtttatataattcaagttgttattattaatattgttatgttgcaagttgcttttgttgttgtc 10918489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 32307022 - 32307061
Alignment:
Q  8 ttgttatatcttgagattgtttgtgtgctgccatgttactg 48  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  32307022 ttgttatatcttgagat-gtttatgtgctgccatgttactg 32307061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16108673 - 16108919
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  16108673 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttgctggttattattgattaagatgcatatgttggttaatgttgtggaaaatgttggt 16108772  T
Q  101 taatatcttggttaa---------------------tgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaat 179  Q
    ||||||  || ||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16108773 taatatgctgattaatatttgattaaagtgggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaat 16108872  T
Q  180 gttggctggtgttggttaatgtgaaatatatatattatgtggaaaat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16108873 gttggctggtgttggttaatgtgaaatatatatattatgtggaaaat 16108919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11303425 - 11303187
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  11303425 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 11303326  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||    
T  11303325 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctgg 11303227  T
Q  189 tgttggttaatgtgaa--atatatatattatgtggaaaat 226  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  11303226 tgttggttaatgtgaaatatatatatattatgtggaaaat 11303187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29796786 - 29796681
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29796786 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 29796687  T
Q  101 taatat 106  Q
    ||||||    
T  29796686 taatat 29796681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29800605 - 29800500
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29800605 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 29800506  T
Q  101 taatat 106  Q
    ||||||    
T  29800505 taatat 29800500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 23664937 - 23665042
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  23664937 tttgatgttgttatatcttgagattgtttgtgtactgccatgctgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 23665036  T
Q  101 taatat 106  Q
    ||||||    
T  23665037 taatat 23665042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 3289583 - 3289657
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  3289583 atattgttgtttatatcattcgagttgttattattgacgttgctatgttgcaagttgtttatgttgttgtctctg 3289657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 46173851 - 46173782
Alignment:
Q  110 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaat 179  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  46173851 ggttaatgtttaattaaagcgggttaacgtttgattaaagttggttaatgtttaggtgatgttggttaat 46173782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 8757163 - 8757233
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||||||||    
T  8757163 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtctctgct 8757233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 40555510 - 40555580
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||||||||    
T  40555510 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtctctgct 40555580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 11053921 - 11053845
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||||||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||| ||||| ||||    
T  11053921 atattgttgtttatatcattcaagttgttattattaatgttgctatattgcaagttctttatgttgttgtctatgct 11053845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 33001239 - 33001175
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    |||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33001239 tatcatccaagttattgttattaacgttgctatgttgcaagttgttttatgttgctgtctctgct 33001175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 10660023 - 10660098
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| |||||| |||||||||| ||||    
T  10660023 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttacgttgctgtctttgct 10660098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 36705432 - 36705507
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| || || | |||||||||||||||| ||||||||||| ||||||||||    
T  36705432 tattattgtttatatcattcaagttgttattgttcatgttgctatgttgcaagatgtttatgttgttgtctctgct 36705507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 47094368 - 47094293
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||||||||  | |||||||||||||||| ||||||||||| ||| ||||||    
T  47094368 tattattgtttatatcattcaagttgttgttatcgatgttgctatgttgcaagatgtttatgttgttgtttctgct 47094293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 832793 - 832858
Alignment:
Q  238 tttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||||||    
T  832793 tttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtctctg 832858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 1197973 - 1198038
Alignment:
Q  238 tttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||||||    
T  1197973 tttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtctctg 1198038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 17071051 - 17071124
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||    
T  17071051 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgatgtttctg 17071124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 21735276 - 21735331
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctg 297  Q
    |||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||    
T  21735276 tatcattcaagttgttattattaatattgctatgttgcaagttgtttatgttgctg 21735331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 15096446 - 15096516
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| |||| |||| ||||||||||||||||  ||||||||||    
T  15096446 atattgttgttcatatcattcaagttgttgttgttaatgttgttatgttgcaagttgttattgttgctgtc 15096516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 13408050 - 13407995
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctg 297  Q
    |||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||    
T  13408050 tatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctg 13407995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 14191856 - 14191915
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    ||||||||||||||| ||||||| |||||||  ||||| |||||||||||| ||||||||    
T  14191856 ttgtttatatcattcaagttgttattattaatattgctttgttgcaagttgcttatgttg 14191915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10896730 - 10896791
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  10896730 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 10896791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15167303 - 15167242
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  15167303 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 15167242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 19558092 - 19558144
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    ||||| ||||||||| ||||||||||||| | |||| ||||||||||||||||    
T  19558092 ttgttcatatcattcaagttgttgttattgatgttgttatgttgcaagttgtt 19558144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 14161645 - 14161676
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtg 220  Q
    ||||||||||||||||||||||||||||||||    
T  14161645 tgttggttaatgtgaaatatatatattatgtg 14161676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 836857 - 836907
Alignment:
Q  244 tcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||||| ||||||| |||||||  |||||||||||||||||| ||||||||    
T  836857 tcattcaagttgttattattaatattgctatgttgcaagttgcttatgttg 836907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 1202037 - 1202087
Alignment:
Q  244 tcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||||| ||||||| |||||||  |||||||||||||||||| ||||||||    
T  1202037 tcattcaagttgttattattaatattgctatgttgcaagttgcttatgttg 1202087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 13133128 - 13133186
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    ||||| ||||| ||||||||| |||||||||| |||| |||| |||| |||||||||||    
T  13133128 atattgttgttcatatcattcaagttgttgttgttaatgttgttatgatgcaagttgtt 13133186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 43277529 - 43277571
Alignment:
Q  189 tgttggttaatgtgaaatatatata-ttatgtggaaaatgtat 230  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  43277529 tgttggttaatgtgaaatacatatatttatgtggaaaatgtat 43277571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 20253422 - 20253475
Alignment:
Q  235 ttgtttatatcattcgagtt-gttgttattaacgttgctatgttgcaagttgtt 287  Q
    ||||| ||||||||| |||| ||||| ||||| |||||||||||||||||||||    
T  20253422 ttgttcatatcattcaagtttgttgtgattaatgttgctatgttgcaagttgtt 20253475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 17130510 - 17130578
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctct 302  Q
    ||||||||||||| | |||||||  |||||| || ||||||||| |||||| ||||||||| |||||||    
T  17130510 ttgtttatatcatccaagttgttagtattaatgtggctatgttgtaagttgttttatgttgttgtctct 17130578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 46386853 - 46386921
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgc-aagttgtt-tatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||| ||||||| | ||||||||||  |||||||| ||||||||||||||||||    
T  46386853 ttataccattcaagttgttattattaatgatgctatgttgtgaagttgttgtatgttgctgtctctgct 46386921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 20261397 - 20261159
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  20261397 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 20261298  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |            ||||||||||||    
T  20261297 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggtgacgttggttaatgttgtgggaaatgttggctgg 20261199  T
Q  189 tgttggttaatgtgaa--atatatatattatgtggaaaat 226  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  20261198 tgttggttaatgtgaaatatatatatattatgtggaaaat 20261159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10684749 - 10684854
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  10684749 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 10684848  T
Q  101 taatat 106  Q
    ||||||    
T  10684849 taatat 10684854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 25045293 - 25045218
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||    
T  25045293 tattattgtttatatcattcaagttgttgttattgatgttgctatgttgcaagacgtttatgttgctgtttctgct 25045218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 6478067 - 6478130
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||| |||| |||||||    
T  6478067 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaagttgcttatattgctgt 6478130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 18389061 - 18389129
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    |||| ||||||||||||||| ||||||| ||||  | |||||||||||||||| |||||||||||||||    
T  18389061 tattattgtttatatcattcaagttgttattatcgatgttgctatgttgcaagatgtttatgttgctgt 18389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 3539030 - 3538960
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| || | |||| ||||||||||||||||  ||||||||||    
T  3539030 atattgttgttcatatcattcaagttgttgttgttgatgttgttatgttgcaagttgttgttgttgctgtc 3538960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6482856 - 6482795
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  6482856 tttgatattgttatatcttaagaatgtttgagtgctgccatgtttccgtttattattgatta 6482795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6486323 - 6486262
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  6486323 tttgatattgttatatcttaagaatgtttgagtgctgccatgtttccgtttattattgatta 6486262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 27860575 - 27860499
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||||| ||||||| |||| |  |||| |||||||||||||||| |||||| ||||| ||||    
T  27860575 atattgttgttcatatcattcaagttgttattatcagtgttgttatgttgcaagttgttgatgttgttgtctttgct 27860499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 44071782 - 44071706
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||| ||||| ||| ||||||| ||||||  |||| |||||||||||||||| |||||| ||||| ||||    
T  44071782 atattgttgttcatatcgttcaagttgttattattagtgttgttatgttgcaagttgttgatgttgttgtctttgct 44071706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 27851920 - 27851879
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||| ||||||| |||||||||||||||| |||||    
T  27851920 tgttggttaatttgaaatacatatattatgtggaaattgtat 27851879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 12942379 - 12942155
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  |||||| |     
T  12942379 tttgatgttgttatattttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatatgttggttaatatttga 12942280  T
Q  101 taatatcttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggct------------aatgttggctgg 188  Q
    | | |  | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |            ||||||||||||    
T  12942279 tta-aagtgggttaatgtttaattaaagtgggttaacctttgattaaagttggttaatatttaggcgacgttggttaatgttgtgggaaatgttggctgg 12942181  T
Q  189 tgttggttaatgtgaaatatatatat 214  Q
    ||||||||||||||||||||||||||    
T  12942180 tgttggttaatgtgaaatatatatat 12942155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 5110504 - 5110598
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5110504 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtctctg 5110598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 5289863 - 5289957
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  5289863 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaccgttgctatgttgcaagttgtttatgttgctgtctctg 5289957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 24267051 - 24266982
Alignment:
Q  234 cttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||||||||||||||    
T  24267051 cttgtttatatcattcaagttgttgttattaatattgttatgttgcaagttgcttatgttgctgtctctg 24266982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 31735632 - 31735761
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgt------------atattcttgtttatatcattcgagttgttgttattaacgttgctatgt 276  Q
    ||||||||||| ||||||| ||||||||||||||||||||            ||||| ||||||||||||||| | ||||| ||||||| ||||||||||    
T  31735632 tgttggttaatttgaaatacatatattatgtggaaaatgtttgatatagaaaatattgttgtttatatcattcaaattgttattattaatgttgctatgt 31735731  T
Q  277 tgcaagttg-tttatgttgctgtctctgct 305  Q
    | ||||||| ||||||||||||||||||||    
T  31735732 tacaagttgttttatgttgctgtctctgct 31735761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 19444049 - 19444112
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  19444049 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaagttgcttatgttgctgt 19444112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 29848266 - 29848342
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| |||| |||||    
T  29848266 atattgttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtccctgct 29848342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 16133439 - 16133502
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||| ||| ||||||||||||    
T  16133439 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaatttgcttatgttgctgt 16133502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 611025 - 610955
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| |||| |||||    
T  611025 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtccctgct 610955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 13751121 - 13751191
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||| |||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  13751121 ttgtttatttcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtctctgct 13751191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 13764635 - 13764565
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||| ||||| |||||||| |||| |||||    
T  13764635 ttgtttatatcattcaagttgttattattaatattgctatgttgctagttgcttatgttgttgtccctgct 13764565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 24441206 - 24441140
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  24441206 ttataccattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtctctgct 24441140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 18658491 - 18658426
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtct 300  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||| ||| |||||||| |||||    
T  18658491 ttgtttatatcattcaagttgttattattaatattgctatgttgcaaattgcttatgttgttgtct 18658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28289319 - 28289403
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggtt-attattgattaagatgcatctgttggttaatgt 84  Q
    |||||||| |||||||||||||||||||||||| |||||||||  ||| || ||||| ||||||| || || ||| |||||||||    
T  28289319 tttgatgtcgttatatcttgagattgtttgtgtactgccatgtcgctgtttaattatggattaagctgtatatgtgggttaatgt 28289403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 22212275 - 22212346
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| ||||| | |||| | |||||||||||| |||||||||||| |||||||    
T  22212275 ttgtttatatcattcaagttgttattattgatgttgttgtgttgcaagttgttttatgttgctgcctctgct 22212346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 19829716 - 19829773
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    |||| ||||||||||||||| ||||| | ||||| | |||||||||||||||| ||||    
T  19829716 tattattgtttatatcattcaagttgatattattgatgttgctatgttgcaagatgtt 19829773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 24551045 - 24551117
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| |||| ||   ||| | |||||||||||||||| | ||||||||| ||||||||||    
T  24551045 tattattgtttatatcattctagttatt---attgatgttgctatgttgcaagatatttatgttgatgtctctgct 24551117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 23492082 - 23492146
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||||||| |||||||| | |||| |||| |||| |||||||||||  ||||||||||    
T  23492082 ttgttcatatcattcaagttgttgcttttaatgttgttatgatgcaagttgttattgttgctgtc 23492146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 23497680 - 23497744
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||||||| |||||||| | |||| |||| |||| |||||||||||  ||||||||||    
T  23497680 ttgttcatatcattcaagttgttgcttttaatgttgttatgatgcaagttgttattgttgctgtc 23497744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 37805042 - 37805157
Alignment:
Q  113 taatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaa--atatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||    
T  37805042 taatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaatgttggctggtgttggttaatgtgaaatatatat 37805141  T
Q  211 atattatgtggaaaat 226  Q
    ||||||||||||||||    
T  37805142 atattatgtggaaaat 37805157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 41876290 - 41876384
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41876290 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtctctg 41876384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9776536 - 9776431
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  9776536 tttgatgttgttatatcttgagattgtttgtgtactgccatgttgctgtttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 9776437  T
Q  101 taatat 106  Q
    ||||||    
T  9776436 taatat 9776431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37804887 - 37804968
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaat 82  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  37804887 tttgatgttgttatatcttgagattgtttgtgcgctgccatgttgctgtttattattgattaagctgcatatgttggttaat 37804968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 42242247 - 42242323
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttgg 184  Q
    ||||||||| ||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  42242247 ttggttaatatttgatgaaaatgggttaacgtttgattaaagttggttcatatttaggtgacgttggttaatgttgg 42242323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 8952817 - 8952885
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  8952817 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaagttgcttatgttgttgtctctg 8952885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 17812681 - 17812617
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||    
T  17812681 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtc 17812617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 10953262 - 10953187
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||| ||||| ||||||| || || | |||||||||||||||| ||||||||||| ||||||||||    
T  10953262 tattattgtttataccattcaagttgttattgttgatgttgctatgttgcaagatgtttatgttgttgtctctgct 10953187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 24277373 - 24277437
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||||||| ||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||    
T  24277373 ttgtttataccattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtc 24277437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 24384840 - 24384776
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||||||| ||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||    
T  24384840 ttgtttataccattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtc 24384776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 25250662 - 25250725
Alignment:
Q  240 tatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctct 302  Q
    |||||||| | | ||||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  25250662 tatatcatccaatttgttgttattaatgttgctatgttgcaagttgttttatgttgttgtctct 25250725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 25314447 - 25314510
Alignment:
Q  240 tatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctct 302  Q
    |||||||| | | ||||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  25314447 tatatcatccaatttgttgttattaatgttgctatgttgcaagttgttttatgttgttgtctct 25314510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 20565891 - 20565833
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    ||||| ||||| |||||||||||||||||||| || | |||| ||||||||||||||||    
T  20565891 atattgttgttcatatcattcgagttgttgttgtttatgttgttatgttgcaagttgtt 20565833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22750282 - 22750221
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  22750282 tttgatattgttatatcttaagaatgtttgagtgctgccatgttgccgtttattattgatta 22750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 1606 - 1501
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaatgttgtggaaaatattggt 100  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  1606 tttgatgttgttatatcttgagattgtttgtgtgttgccttgttactggttattattgattaagatgcatctgttggttaatgttgtgggaaatgttggt 1507  T
Q  101 taatat 106  Q
    ||||||    
T  1506 taatat 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 113 - 207
Alignment:
Q  209 atatattatgtggaaaatgtatattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  113 atatattatgtggaaaatgtatattgttgtttatatcattcgagttgttattattaacgttgctatgttgcaagttgtttatgttgctgtctctg 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 8817 - 8699
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaata 207  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| |||||||||||||||||||||||| |||||||    
T  8817 ttggttaatgtatgattaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtgttggttaatatgaaata 8718  T
Q  208 tatatattatgtggaaaat 226  Q
    ||| |||||||||||||||    
T  8717 tatgtattatgtggaaaat 8699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 29327742 - 29327668
Alignment:
Q  110 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29327742 ggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggttaatgttgg 29327668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 21322046 - 21322150
Alignment:
Q  122 attaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaatatatatattatgtgg 221  Q
    |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| ||||||||||||||||||||||||||||||||||| |||||||||     
T  21322046 attaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtgttggttaatgtgaaatatatgtattatgtga 21322145  T
Q  222 aaaat 226  Q
    |||||    
T  21322146 aaaat 21322150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 21326634 - 21326738
Alignment:
Q  122 attaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaatatatatattatgtgg 221  Q
    |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  21326634 attaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtattggttaatgtgaaatatatgtattatgtgg 21326733  T
Q  222 aaaat 226  Q
    |||||    
T  21326734 aaaat 21326738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 22584502 - 22584572
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  22584502 ttgtttatatcattcaagtggttattattaatgttgctatgttgcaagttgtttatgttgctgtctctgct 22584572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 23947491 - 23947414
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  23947491 atattattgtttatatcattcaagttgttattattaatgttgctatgttgcaagttgttttatgttgctgtctctgct 23947414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 23889015 - 23888942
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctct 302  Q
    ||||| ||||||||||| ||| ||||||| ||||||| || ||| |||||||||||||||||||||||||||||    
T  23889015 atattgttgtttatatcgttcaagttgttattattaatgtagctgtgttgcaagttgtttatgttgctgtctct 23888942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 17907678 - 17907807
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat------------attcttgtttatatcattcgagttgttgttattaacgttgctatgt 276  Q
    ||||||||||||||||||| ||||||||||||||||| ||||            ||| ||||| ||||||||| ||||| | ||||||| ||||||||||    
T  17907678 tgttggttaatgtgaaatacatatattatgtggaaaaagtatgatatagaaaatattgttgttcatatcattcaagttgatattattaatgttgctatgt 17907777  T
Q  277 tgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||| ||||||||| ||||||||||    
T  17907778 tgcaagttgttttatgttgttgtctctgct 17907807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 39695292 - 39695367
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  39695292 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgttgtttctgct 39695367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 20454524 - 20454454
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| |||| |||||    
T  20454524 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtccctgct 20454454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 22244694 - 22244617
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||| ||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||| ||||||||| ||||||||||    
T  22244694 atattattgtttatatctttcaagttgttattattaatgtttctatgttgcaagttgttttatgttgatgtctctgct 22244617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 17217857 - 17217802
Alignment:
Q  251 agttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  17217857 agttgttattattaatgttgctatgttgcaagttgttttatgttgctgtctctgct 17217802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 20455281 - 20455222
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| ||||||||    
T  20455281 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttg 20455222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 20460259 - 20460200
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| ||||||||    
T  20460259 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttg 20460200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 19882250 - 19882191
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||  ||||||||    
T  19882250 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagtttcttatgttg 19882191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2418891 - 2418949
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattga 59  Q
    |||||| ||||||||| || |||||| ||||||||||||||||| ||| ||||||||||    
T  2418891 tttgatattgttatatattaagattgcttgtgtgctgccatgttgctgtttattattga 2418949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 22318716 - 22318786
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| |||| |||| |||||||||||||| |  ||||||||||    
T  22318716 atattgttgttcatatcattcaagttgttgttgttaatgttgttatgttgcaagttgatattgttgctgtc 22318786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 25849210 - 25849284
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgc 304  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||| ||||||||| || |||||||||  |||||||    
T  25849210 tattattgtttatatcattcaagttgttattattgatgttgctgtgttgcaagatggttatgttgccatctctgc 25849284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 31723370 - 31723440
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| |||| |||| |||| |||||||||||  ||||||||||    
T  31723370 atattgttgttcatatcattcaagttgttgttgttaatgttgttatgatgcaagttgttattgttgctgtc 31723440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 8728672 - 8728725
Alignment:
Q  9 tgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    ||||||||||| ||| |||||| ||||||||||||||| | |||||||||||||    
T  8728672 tgttatatcttaagaatgtttgagtgctgccatgttaccgtttattattgatta 8728725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 22419439 - 22419475
Alignment:
Q  8 ttgttatatcttgagattgtttgtgtgctgccatgtt 44  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22419439 ttgttatatcttgagattgcttgtgtgctgccatgtt 22419475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 23418617 - 23418545
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctct 302  Q
    |||| ||||||||||||||| |   |||||||| || |||| ||||||||||| ||||||||||| |||||||    
T  23418617 tattattgtttatatcattcaaaccgttgttatcaatgttgttatgttgcaagatgtttatgttgttgtctct 23418545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35026880 - 35026936
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattatt 57  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||  || ||||||||    
T  35026880 tttgatattgttatatcttgagattgcttgtgagctgccatgttgttgtttattatt 35026936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 42266361 - 42266432
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| ||||  | |||||||||||||||| || ||||||||| ||| ||||||    
T  42266361 ttgtttatatcattcaagttgttattatcgatgttgctatgttgcaagatgttttatgttgttgtttctgct 42266432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 20025043 - 20025101
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    ||||| ||||| ||||||||| ||||  ||| ||||| |||||||||||||||||||||    
T  20025043 atattgttgttcatatcattcaagttaatgtgattaatgttgctatgttgcaagttgtt 20025101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 29327765 - 29327716
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaa 157  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||| ||||||    
T  29327765 ttggttaatatttgattaaagtgggttaatgtttaattaaagtgggttaa 29327716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44476771 - 44476710
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||| ||||| | | |||||||||||||    
T  44476771 tttgatattgttatatcttaagaatgtttgagtgctgcgatgtttccgtttattattgatta 44476710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44480033 - 44479972
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgatta 62  Q
    |||||| |||||||||||| ||| |||||| ||||||| ||||| | | |||||||||||||    
T  44480033 tttgatattgttatatcttaagaatgtttgagtgctgcgatgtttccgtttattattgatta 44479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 19778232 - 19778350
Alignment:
Q  108 ttggttaatgtttaattaaagtgggttaacgtttgattaaagttggttaatatttaggtgacgttggctaatgttggctggtgttggttaatgtgaaata 207  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||| |||||||  | ||||||| |||||||||||||||||||||||| |||||||    
T  19778232 ttggttaatgtatgattaaagtgggttaatatttgattaaagtgggttgatatttatttaacgttggttaatgttggctggtgttggttaatatgaaata 19778331  T
Q  208 tatatattatgtggaaaat 226  Q
    ||| |||||||||||||||    
T  19778332 tatgtattatgtggaaaat 19778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 18275206 - 18275130
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  18275206 atattgttgtttatatcattcaagttgttattattaacgttgctatgttgcaagttgtttatgttgttgtccctgct 18275130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 18823891 - 18823821
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  18823891 ttgtttatatcattcaagttgttgttattaatattgttatgttgcaagttgcttatgttgctgtctctgct 18823821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 13528561 - 13528624
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||    
T  13528561 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaagttgcttatgttgctgt 13528624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 52983430 - 52983361
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgc 304  Q
    ||||||||||||||| ||||||| ||||||| |||| |||||||||||||| |||||||| |||||||||    
T  52983430 ttgtttatatcattcaagttgttattattaatgttgttatgttgcaagttgcttatgttgatgtctctgc 52983361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 18270552 - 18270476
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| || |||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||| |||| |||||    
T  18270552 atattgttttttatatcattctagttgttattatttacgttgttatgttgcaagttgtttatgttgttgtccctgct 18270476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 19761989 - 19762064
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||| ||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||||||||||    
T  19761989 tattattgattatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgatgtctctgct 19762064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 38057415 - 38057490
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  38057415 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgttgtttctgct 38057490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 51476261 - 51476202
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  51476261 ttgtttatattattcaagttgttattattaatgttgctatgttgcaagttgtttatgttg 51476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 21181092 - 21181162
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| |||| |||||    
T  21181092 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtccctgct 21181162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 7792625 - 7792689
Alignment:
Q  241 atatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||| ||||    
T  7792625 atatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtctttgct 7792689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 10813290 - 10813354
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||    
T  10813290 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtc 10813354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 8276754 - 8276830
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgctc 306  Q
    |||| |||| |||||||||| ||||||||||||| | |||| ||||||||||| | ||||||||| ||| |||||||    
T  8276754 tattattgtatatatcattcaagttgttgttattgatgttgttatgttgcaagatatttatgttgatgtttctgctc 8276830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 42697002 - 42696935
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||| | || |||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||    
T  42697002 ttatatcatccaagatgttgttattaatgttgctacgttgcaagttgttttatgttgttgtctctgct 42696935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 44822888 - 44822958
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |  |||||||||||||||  ||||||||| ||||||||    
T  44822888 ttgtttatatcattcaagttgttattattaatatcactatgttgcaagttgcctatgttgctatctctgct 44822958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 21240017 - 21240081
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||||||| ||||||| || || | |||| ||||||||||||||||| ||||||||||    
T  21240017 ttgttcatatcattcaagttgttattgttgatgttgttatgttgcaagttgtttgtgttgctgtc 21240081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 22349876 - 22349812
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||| ||||||||||||||| |||| || ||||  | |||||||||||||||| |||||||||||    
T  22349876 tattattgtttatatcattcaagttattattatcgatgttgctatgttgcaagatgtttatgttg 22349812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 16400953 - 16400882
Alignment:
Q  235 ttgtttata-tcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||| |||||| ||||||| |||||||  || ||||||||||||||| |||||||| |||| |||||    
T  16400953 ttgtttatagtcattcaagttgttattattaatatttctatgttgcaagttgcttatgttgttgtccctgct 16400882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 45754741 - 45754670
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||||||| | |||||||  |||||| || |||||||| ||||||| |||||||||| |||||||||    
T  45754741 ttgtttatatcatccaagttgttagtattaatgtggctatgttacaagttgatttatgttgcagtctctgct 45754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 20587964 - 20587896
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttg-caagttgtt-tatgttgctgtctctgct 305  Q
    ||||||||||| ||||||| ||||||| | | ||||||||  |||||||| ||||||||||||||||||    
T  20587964 ttatatcattcaagttgttattattaatgatactatgttgtgaagttgttgtatgttgctgtctctgct 20587896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 20592502 - 20592434
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttg-caagttgtt-tatgttgctgtctctgct 305  Q
    ||||||||||| ||||||| ||||||| | | ||||||||  |||||||| ||||||||||||||||||    
T  20592502 ttatatcattcaagttgttattattaatgatactatgttgtgaagttgttgtatgttgctgtctctgct 20592434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 20634401 - 20634469
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgc-aagttgtt-tatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||| ||||||| | ||||||||||  |||||||| ||||||||||||||||||    
T  20634401 ttataccattcaagttgttattattaatgatgctatgttgtgaagttgttgtatgttgctgtctctgct 20634469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 24726571 - 24726539
Alignment:
Q  273 atgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||||| ||||||||||||||||||||||    
T  24726571 atgttgcaagatgtttatgttgctgtctctgct 24726539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3201 - 3120
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcatctgttggttaat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||| |||||||||||    
T  3201 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttgctgtttattaatgattaagctgcatatgttggttaat 3120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 6911 - 6835
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  6911 atattgttgtttatatcatttgagttgttattattaatgttgctatgttgcaagttgcttatgttgctgtctctgct 6835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 404 - 474
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||||||||    
T  404 ttgtttatatcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgctgtctctgct 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 59634 - 59569
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    ||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  59634 atattgttttttatatcattcgagttgttattattaacgttgttatgttgcaagttgtttatgttg 59569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 6196 - 6121
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| |||| || |||||||  ||||||||||||||||||||||||||| ||||||||||    
T  6196 tattgttgtttatatcattcaagttattattattaatattgctatgttgcaagttgtttatgttgttgtctctgct 6121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 8348 - 8273
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| |||| || |||||||  ||||||||||||||||||||||||||| ||||||||||    
T  8348 tattgttgtttatatcattcaagttattattattaatattgctatgttgcaagttgtttatgttgttgtctctgct 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1419 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 124 - 67
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattg 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  124 tttgatattgttatatcttgagattgtttgtgtgctgccatgttgctgtttattattg 67  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6136 - 6067
Alignment:
Q  1 tttgatgttgttatatcttgagattgtttgtgtgctgccatgttactggttattattgattaagatgcat 70  Q
    |||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||| |||||    
T  6136 tttgatattgttatatcttgatattgtttgtgtgctgccatgttgctgtttattattgagtaagctgcat 6067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 766 - 839
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||||||||    
T  766 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgttgtctctg 839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 53406 - 53471
Alignment:
Q  238 tttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||||||||||||    
T  53406 tttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgctgtctctg 53471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 10967 - 10891
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| || |||||||||||| ||||||| ||||||| ||| |||||||||||||||| ||||||| ||||||||||    
T  10967 atattgttctttatatcattcaagttgttattattaatgtttctatgttgcaagttgtctatgttgttgtctctgct 10891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 34152 - 34216
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgtt 293  Q
    ||||| ||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||    
T  34152 atattgttgtttatatcattcaagttgttattattaatgttgctatgttgctagttgtttatgtt 34216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 1296 - 1363
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctct 302  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||| |||||| ||||||||||||||||    
T  1296 ttgtttatatcattcaagttgttattattaatattgctatgttgtaagttgcttatgttgctgtctct 1363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 8352 - 8277
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  8352 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgttgtttctgct 8277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 5114 - 5039
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| |||| || |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  5114 tattgttgtttatatcattcaagttattattattaatattgctatgttgcaagttgcttatgttgttgtctctgct 5039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 2757 - 2824
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctct 302  Q
    ||||||||||||||| ||||||| || ||||  |||||||||||||||||| ||||||||||||||||    
T  2757 ttgtttatatcattcaagttgttatttttaatattgctatgttgcaagttgcttatgttgctgtctct 2824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 16052 - 15977
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  16052 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgatgtttctgct 15977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 13234 - 13170
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||| ||||||||||||||| ||||||| ||||| | ||| |||||||||||| |||||||||||    
T  13234 tattattgtttatatcattcaagttgttattattgatgtttctatgttgcaagatgtttatgttg 13170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 17695 - 17627
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctct 302  Q
    ||||||||||||| | || ||||  |||||| || |||||||||||||||| |||||||||||||||||    
T  17695 ttgtttatatcatccaaggtgttagtattaatgtggctatgttgcaagttgttttatgttgctgtctct 17627  T

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Target: scaffold0149 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 20937 - 20862
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  20937 tattattgtttatatcattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgttgtttctgct 20862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 159714 - 159789
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| ||||  | |||||||||||||||| |||||||| |||||||||||||    
T  159714 tattattgtttatatcattcaagttgttattatcgatgttgctatgttgcaagatgtttatgctgctgtctctgct 159789  T

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Target: scaffold2046 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold2046
Description:

Target: scaffold2046; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 395 - 325
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||| |||||| ||||||| |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  395 ttgtttatttcattcaagttgttattattaatattgctatgttgcaagttgcttatgttgttgtctctgct 325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 3320 - 3250
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||| ||||| ||||||| || ||||  ||||||||||||||||||||||||||| ||||||||||    
T  3320 ttgtttataacattcaagttgttattgttaatattgctatgttgcaagttgtttatgttgttgtctctgct 3250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 40992 - 41062
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  ||| |||||||||||||| ||||||||||||| |||||    
T  40992 ttgtttatatcattcaagttgttattattaatattgatatgttgcaagttgcttatgttgctgtcactgct 41062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 3163 - 3093
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||| |||  ||| ||||||||||    
T  3163 ttgtttatatcattcaagttgttgttattaatattgctatgttgcaagttgcttaaattgatgtctctgct 3093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 5705 - 5630
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| |||||||||| |||| ||||||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  5705 tattattgtttatataattcaagttgttattattgatgttgctatgttgcaagatgtttatgttgttgtttctgct 5630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 706 - 773
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||| | |||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  706 ttatatcatccaagttgtagttattaacgttgctatgttggaagttgttttatgttgctctctctgct 773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 6010 - 6077
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||| | |||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  6010 ttatatcatccaagttgtagttattaacgttgctatgttggaagttgttttatgttgctctctctgct 6077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 11494 - 11544
Alignment:
Q  256 ttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  11494 ttgtcattaacgttgctatgttgcaatttgttttatgttgttgtctctgct 11544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 127187 - 127254
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||| | ||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||    
T  127187 ttatatcatccaagttgttgttattaaagttgctatgttgcaagctgttttatgttgttgtctctgct 127254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 127127 - 127162
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaa 224  Q
    ||||||||||||||||||| ||||||||||||||||    
T  127127 tgttggttaatgtgaaatacatatattatgtggaaa 127162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 2991 - 2921
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||| |||||||  || ||||||||||||||| |||||||| |||| |||||    
T  2991 ttgtttatatcattcaagttgttattattaatattactatgttgcaagttgcttatgttgttgtccctgct 2921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 12277 - 12347
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| | ||||| |||||||  |||||||||||||||||| |||||||| |||| |||||    
T  12277 ttgtttatatcattcaaattgttattattaatattgctatgttgcaagttgcttatgttgttgtccctgct 12347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 136378 - 136435
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgt 286  Q
    ||||| ||||| ||||||||| ||||||||||||||| |||  |||||||||||||||    
T  136378 atattgttgttcatatcattcaagttgttgttattaatgttattatgttgcaagttgt 136435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 19408 - 19481
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctg 303  Q
    |||| ||||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||||||| ||| ||||    
T  19408 tattattgtttatatcattcaagttgttattattgatgtttctatgttgcaagatgtttatgttgttgtttctg 19481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 66302 - 66226
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||||  ||||||| ||||||| |||| |||||||||||||||| |||||| ||||| ||||    
T  66302 atattgttgttcatatcattaaagttgttattattaatgttgttatgttgcaagttgttgatgttgttgtctttgct 66226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 8335 - 8272
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||||||| ||||||| |||||||  ||| |||||||||||||| ||||||||||||| |||||    
T  8335 tatcattcaagttgttattattaatattgatatgttgcaagttgcttatgttgctgtccctgct 8272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 1048 - 978
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| || | |||| ||||||||||||||||  ||||||||||    
T  1048 atattgttgttcatatcattcaagttgttgttgttgatgttgttatgttgcaagttgttattgttgctgtc 978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 858 - 788
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||||||||||||| |||||||  | |||| |||| |||| |||||||||||  ||||||||||    
T  858 atattattgtttatatcattcaagttgttcctgttaatgttgttatgatgcaagttgttattgttgctgtc 788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 16895 - 16837
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtt 287  Q
    ||||||||||| ||||||||  ||||||||||||||| |||| |||||||||| |||||    
T  16895 atattcttgttcatatcatttaagttgttgttattaatgttgttatgttgcaaattgtt 16837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 3712 - 3782
Alignment:
Q  235 ttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||  ||||||| ||| |||  |||||||||||||||||| |||||||| |||| |||||    
T  3712 ttgtttatatcatttaagttgttattactaatattgctatgttgcaagttgcttatgttgttgtccctgct 3782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 187220 - 187290
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||| ||||||||| |||||||||| || | |||| ||||||||||||||||  ||||||||||    
T  187220 atattgttgttcatatcattcaagttgttgttgttgatgttgttatgttgcaagttgttattgttgctgtc 187290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 187410 - 187480
Alignment:
Q  229 atattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtc 299  Q
    ||||| ||||||||||||||| |||||||  | |||| |||| |||| |||||||||||  ||||||||||    
T  187410 atattattgtttatatcattcaagttgttcctgttaatgttgttatgatgcaagttgttattgttgctgtc 187480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 6077 - 6021
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgt 298  Q
    |||||||| ||||||| |||||||  || ||||||||||||||| ||||||||||||    
T  6077 tatcattcaagttgttattattaatatttctatgttgcaagttgcttatgttgctgt 6021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 2052 - 2100
Alignment:
Q  242 tatcattcgagttgttgttattaacgttgctatgttgcaagttgtttat 290  Q
    |||||||| ||||||| |||||||  |||||||||||||||||||||||    
T  2052 tatcattcaagttgttattattaatattgctatgttgcaagttgtttat 2100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 28560 - 28493
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttgcaagttg-tttatgttgctgtctctgct 305  Q
    ||||||||||| ||||||| ||||||| ||  ||||| ||||||||| ||||||||||| ||||||||    
T  28560 ttatatcattcaagttgttattattaatgtgactatgctgcaagttgttttatgttgctatctctgct 28493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 28620 - 28580
Alignment:
Q  189 tgttggttaatgtgaaatatatatattatgtggaaaatgtat 230  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  28620 tgttggttaatgtgaaatacatatattatgt-gaaaatgtat 28580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 397784 - 397709
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    |||| ||||||||||||||| ||||||| || || | |||||||| ||||||  |||||||||||||  |||||||    
T  397784 tattattgtttatatcattcaagttgttattcttgatgttgctattttgcaaaatgtttatgttgctacctctgct 397709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 36340 - 36377
Alignment:
Q  268 ttgctatgttgcaagttgtttatgttgctgtctctgct 305  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  36340 ttgctatgttgcaagatgtttatgttgctgtttctgct 36377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1662 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1662
Description:

Target: scaffold1662; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 187 - 255
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttg-caagttgtt-tatgttgctgtctctgct 305  Q
    ||||||||||| ||||||| ||||||| | ||||||||||  |||||||| ||||||| ||||||||||    
T  187 ttatatcattcaagttgttattattaatgatgctatgttgtgaagttgttgtatgttgttgtctctgct 255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 5479 - 5547
Alignment:
Q  239 ttatatcattcgagttgttgttattaacgttgctatgttg-caagttgtt-tatgttgctgtctctgct 305  Q
    ||||| ||||| ||||||| ||||||| ||||||||||||  |||||||| ||||||| ||||||||||    
T  5479 ttataccattcaagttgttattattaatgttgctatgttgtgaagttgttgtatgttgttgtctctgct 5547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 2733 - 2765
Alignment:
Q  267 gttgctatgttgcaagttgtttatgttgctgtc 299  Q
    |||||||||||||||||||||||||||| ||||    
T  2733 gttgctatgttgcaagttgtttatgttgatgtc 2765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 12622 - 12558
Alignment:
Q  230 tattcttgtttatatcattcgagttgttgttattaacgttgctatgttgcaagttgtttatgttg 294  Q
    |||| ||||||||||||||| |||| || ||||  | |||| ||||||||||| |||||||||||    
T  12622 tattattgtttatatcattcaagttattattatcgatgttgatatgttgcaagatgtttatgttg 12558  T

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