View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_60 (Length: 301)

Name: NF11854_low_60
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_60
NF11854_low_60
[»] chr4 (21 HSPs)
chr4 (7-296)||(9237361-9237651)
chr4 (155-255)||(10739359-10739459)
chr4 (155-255)||(10953128-10953228)
chr4 (8-126)||(9258856-9258975)
chr4 (155-255)||(10733266-10733366)
chr4 (155-255)||(10947035-10947135)
chr4 (155-278)||(26963361-26963485)
chr4 (33-126)||(9166137-9166230)
chr4 (155-259)||(3769602-3769706)
chr4 (155-247)||(24288034-24288126)
chr4 (155-255)||(50168632-50168732)
chr4 (180-247)||(33461438-33461505)
chr4 (155-256)||(49976625-49976726)
chr4 (187-255)||(33458319-33458387)
chr4 (172-247)||(48161006-48161081)
chr4 (172-247)||(48167225-48167300)
chr4 (33-126)||(9173214-9173306)
chr4 (187-247)||(6257257-6257317)
chr4 (155-206)||(26956849-26956900)
chr4 (172-243)||(50427427-50427497)
chr4 (138-206)||(34308077-34308142)
[»] scaffold1064 (1 HSPs)
scaffold1064 (8-296)||(1360-1651)
[»] chr8 (13 HSPs)
chr8 (155-255)||(9935318-9935418)
chr8 (158-247)||(36819018-36819107)
chr8 (158-255)||(5542183-5542280)
chr8 (158-247)||(14799439-14799528)
chr8 (158-255)||(32890928-32891025)
chr8 (158-255)||(32897052-32897149)
chr8 (158-247)||(42993027-42993116)
chr8 (172-255)||(14417980-14418063)
chr8 (158-255)||(7771271-7771368)
chr8 (155-255)||(22219736-22219837)
chr8 (155-255)||(39735572-39735672)
chr8 (196-247)||(10700076-10700127)
chr8 (155-216)||(39727340-39727401)
[»] chr3 (24 HSPs)
chr3 (155-255)||(10238232-10238332)
chr3 (155-255)||(10244354-10244454)
chr3 (138-255)||(11846069-11846183)
chr3 (158-255)||(11839748-11839845)
chr3 (155-255)||(8331826-8331926)
chr3 (155-255)||(17055813-17055913)
chr3 (155-255)||(30051122-30051222)
chr3 (155-255)||(55003432-55003532)
chr3 (158-255)||(49151651-49151748)
chr3 (158-255)||(49157718-49157815)
chr3 (138-255)||(53069060-53069174)
chr3 (158-255)||(10760673-10760770)
chr3 (158-255)||(38449086-38449183)
chr3 (158-255)||(38455573-38455670)
chr3 (156-255)||(48128068-48128167)
chr3 (158-255)||(10766894-10766991)
chr3 (173-246)||(28964916-28964989)
chr3 (158-247)||(42191243-42191332)
chr3 (158-247)||(42197185-42197274)
chr3 (187-255)||(17593334-17593402)
chr3 (187-255)||(34300536-34300604)
chr3 (155-246)||(46656732-46656823)
chr3 (187-255)||(12108719-12108788)
chr3 (211-255)||(13445100-13445144)
[»] scaffold0236 (1 HSPs)
scaffold0236 (155-255)||(5574-5674)
[»] chr7 (15 HSPs)
chr7 (155-255)||(339410-339510)
chr7 (158-255)||(3811192-3811289)
chr7 (158-255)||(3817334-3817431)
chr7 (155-255)||(351825-351925)
chr7 (155-255)||(28420979-28421079)
chr7 (158-255)||(42767318-42767415)
chr7 (155-255)||(12804039-12804139)
chr7 (187-255)||(20238990-20239058)
chr7 (155-255)||(35148024-35148124)
chr7 (151-252)||(5849567-5849668)
chr7 (157-255)||(43540024-43540122)
chr7 (187-259)||(18666548-18666619)
chr7 (187-247)||(22741977-22742037)
chr7 (158-247)||(26383673-26383762)
chr7 (158-243)||(30219269-30219354)
[»] chr6 (17 HSPs)
chr6 (155-255)||(8650823-8650923)
chr6 (155-255)||(8662801-8662901)
chr6 (155-247)||(32035306-32035398)
chr6 (158-255)||(21782776-21782873)
chr6 (155-278)||(21197041-21197165)
chr6 (158-255)||(4580344-4580441)
chr6 (152-255)||(18778623-18778725)
chr6 (155-255)||(21190886-21190986)
chr6 (155-247)||(17581673-17581765)
chr6 (187-247)||(25343671-25343731)
chr6 (187-247)||(25354258-25354318)
chr6 (155-255)||(31756235-31756335)
chr6 (187-276)||(21783361-21783451)
chr6 (187-276)||(21789584-21789674)
chr6 (170-255)||(34603366-34603450)
chr6 (170-255)||(34724643-34724727)
chr6 (187-268)||(21770610-21770691)
[»] chr2 (14 HSPs)
chr2 (155-255)||(35084696-35084796)
chr2 (155-255)||(35090669-35090769)
chr2 (155-255)||(36750454-36750554)
chr2 (155-247)||(28682965-28683057)
chr2 (158-247)||(13456147-13456236)
chr2 (158-247)||(13462088-13462177)
chr2 (187-247)||(13149738-13149798)
chr2 (155-255)||(23343600-23343700)
chr2 (155-242)||(35438729-35438816)
chr2 (158-255)||(30965367-30965464)
chr2 (187-252)||(31002419-31002484)
chr2 (187-252)||(31008397-31008462)
chr2 (155-255)||(44716824-44716925)
chr2 (155-255)||(11048573-11048673)
[»] chr5 (17 HSPs)
chr5 (155-260)||(14610183-14610288)
chr5 (155-255)||(12686199-12686299)
chr5 (155-255)||(12692301-12692401)
chr5 (155-262)||(30384398-30384504)
chr5 (158-255)||(28525409-28525506)
chr5 (158-255)||(28531505-28531602)
chr5 (155-255)||(24054374-24054474)
chr5 (158-252)||(41297319-41297413)
chr5 (158-247)||(7389571-7389660)
chr5 (155-255)||(30772322-30772423)
chr5 (187-255)||(32094212-32094280)
chr5 (187-255)||(32097013-32097081)
chr5 (170-255)||(16215209-16215294)
chr5 (159-255)||(19066131-19066227)
chr5 (155-244)||(26316812-26316901)
chr5 (155-206)||(26509938-26509986)
chr5 (210-259)||(37896373-37896422)
[»] chr1 (13 HSPs)
chr1 (155-255)||(25387524-25387624)
chr1 (155-255)||(34740025-34740125)
chr1 (155-278)||(44410025-44410149)
chr1 (155-247)||(50306236-50306328)
chr1 (158-255)||(1078263-1078360)
chr1 (155-255)||(24926774-24926874)
chr1 (155-276)||(24963722-24963846)
chr1 (158-255)||(25381558-25381655)
chr1 (187-247)||(31058091-31058151)
chr1 (170-247)||(12183619-12183696)
chr1 (187-255)||(8092898-8092966)
chr1 (187-247)||(31051591-31051651)
chr1 (187-239)||(27955216-27955268)
[»] scaffold0012 (1 HSPs)
scaffold0012 (155-255)||(172910-173010)
[»] scaffold0363 (1 HSPs)
scaffold0363 (172-255)||(656-739)
[»] scaffold0440 (1 HSPs)
scaffold0440 (155-255)||(1214-1314)
[»] scaffold0208 (2 HSPs)
scaffold0208 (171-255)||(12435-12519)
scaffold0208 (171-255)||(6562-6646)
[»] scaffold0185 (1 HSPs)
scaffold0185 (156-259)||(5958-6061)
[»] scaffold0085 (1 HSPs)
scaffold0085 (158-278)||(38443-38564)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 9237651 - 9237361
Alignment:
Q  7 tcaacaagatcatgttcaaag-ccagcatagtaatataaatcaatgtataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttg 105  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9237651 tcaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttg 9237552  T
Q  106 aatgtgattatggcctcctaatgttagaaatgaaaacagattttatataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9237551 aatgtgattatggcctcctaatgttagaaatgaaaacagattttatataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacagaacattga 9237452  T
Q  206 atacgattatgctcagatttacgacatgtttgatttatcaagtatattaataataagtattagaatacctggaactttgatgtccatctca 296  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  9237451 atatgattatgctcggatttacgacatgtttgatttatcaagtatattaataataagtattataatacctggaactttgatggccctctca 9237361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10739359 - 10739459
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  10739359 aaaacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 10739458  T
Q  255 a 255  Q
    |    
T  10739459 a 10739459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10953128 - 10953228
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  10953128 aaaacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 10953227  T
Q  255 a 255  Q
    |    
T  10953228 a 10953228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 9258975 - 9258856
Alignment:
Q  8 caacaagatcatgttcaaag-ccagcatagtaatataaatcaatgtataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttga 106  Q
    ||||||||||||  |||||| |||  |||||||||||||||||| |||||| ||||||||| |||| |||||||||||||| |||  |||||||||| ||    
T  9258975 caacaagatcattatcaaaggccaatatagtaatataaatcaatatataaattaagaaaacttggaaaattatgcatttcaattttaaaatacatttgga 9258876  T
Q  107 atgtgattatggcctcctaa 126  Q
    || ||||| |||||||||||    
T  9258875 atttgattgtggcctcctaa 9258856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10733266 - 10733366
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||| ||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  10733266 aaaacatgttcaacaattatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 10733365  T
Q  255 a 255  Q
    |    
T  10733366 a 10733366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10947035 - 10947135
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||| ||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  10947035 aaaacatgttcaacaattatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 10947134  T
Q  255 a 255  Q
    |    
T  10947135 a 10947135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 26963361 - 26963485
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| |||||||||| |||||  |||||||||||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| |||| |    
T  26963361 aaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataagtatgaacggatctacgacatgtttgatttatcaaggatatca 26963460  T
Q  255 ataataagtatta-gaatacctgga 278  Q
    | ||| ||||||| |||||||||||    
T  26963461 agaattagtattaggaatacctgga 26963485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 9166137 - 9166230
Alignment:
Q  33 atagtaatataaatcaatgtataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttgaatgtgattatggcctcctaa 126  Q
    |||||| ||||||||| | |||||||||||||||| |||| |||||||||||||| |||  |||||||||| |||| ||||| |||||||||||    
T  9166137 atagtactataaatcagtatataaactaagaaaacttggaaaattatgcatttcaattttaaaatacatttggaatttgattgtggcctcctaa 9166230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 3769706 - 3769602
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||| ||||||||| ||||||||| |||| |  ||||||||||||||||||| | ||||||| || ||| |||||||||||| ||| |||||| ||||||    
T  3769706 aaaatatgttcaataattatgaatcaataatttaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttcattaatcaaggatatta 3769607  T
Q  255 ataat 259  Q
    |||||    
T  3769606 ataat 3769602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 24288126 - 24288034
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| ||  || |||||||||||||||||||||||    
T  24288126 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgtatctacgacatgtttgatttatcaag 24288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 50168732 - 50168632
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||| ||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| ||  || ||||||||||||||||||||||| ||||||    
T  50168732 aaaacacgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgaatatacgacatgtttgatttatcaagaatatta 50168633  T
Q  255 a 255  Q
    |    
T  50168632 a 50168632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 33461438 - 33461505
Alignment:
Q  180 aatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||| |||||||||||||||||||| | ||||||| || |||||||||||||||||||||||||||    
T  33461438 aatagtggaagcaaacaaaacattgaacatgattatggtcggatttacgacatgtttgatttatcaag 33461505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 49976726 - 49976625
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||| |||||  |||||||||  ||||   ||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| ||| ||    
T  49976726 aaaacatattcaacaattatgaatcgatagcgaaagcaaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaaggataata 49976627  T
Q  255 at 256  Q
    ||    
T  49976626 at 49976625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 33458319 - 33458387
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||||| |||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  33458319 gaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 33458387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 48161081 - 48161006
Alignment:
Q  172 tatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||| |||||  |||||||||||||||||||| |  |||||| || ||| |||||||||||||||||||||||    
T  48161081 tatgaatcaatagcggaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaag 48161006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 48167300 - 48167225
Alignment:
Q  172 tatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||| |||||  |||||||||||||||||||| |  |||||| || ||| |||||||||||||||||||||||    
T  48167300 tatgaatcaatagcggaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaag 48167225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 9173306 - 9173214
Alignment:
Q  33 atagtaatataaatcaatgtataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttgaatgtgattatggcctcctaa 126  Q
    |||||||||||||||| | |||||||||||||||| |||| | |||||| ||||| |||  ||| |||||| |||| ||||| |||||||||||    
T  9173306 atagtaatataaatcagtatataaactaagaaaacttggaaacttatgcttttcaattt-taaagacatttggaatttgattttggcctcctaa 9173214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 6257257 - 6257317
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||||||||| | ||||||| || ||| ||| |||||||||||||||||||    
T  6257257 gaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaag 6257317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 26956849 - 26956900
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaa 206  Q
    ||||||||||||| |||||||||| |||||  |||||||| |||||||||||    
T  26956849 aaaacatgttcaacgattatgaatcaatagcggaagcaaataaaacattgaa 26956900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 50427497 - 50427427
Alignment:
Q  172 tatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttat 243  Q
    ||||||| |||||| ||||||| |||||||||||| | ||||||| || ||| |||||||||||| ||||||    
T  50427497 tatgaattaatagtggaagcaatcaaaacattgaa-atgattatgatcggatgtacgacatgtttaatttat 50427427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 34308077 - 34308142
Alignment:
Q  138 aaaacagattttatataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaa 206  Q
    |||||||||||||||   ||||||||||||| ||||||||| |||||  |||||| |||||| ||||||    
T  34308077 aaaacagattttata---aaacatgttcaataattatgaatcaatagcggaagcatacaaaatattgaa 34308142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 1651 - 1360
Alignment:
Q  8 caacaagatcatgttcaaag-ccagcatagtaatataaatcaatgtataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttga 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1651 caacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaattatgcatttcattttcgaaatacattttga 1552  T
Q  107 atgtgattatggcctcctaatgttagaaatgaaaacagattttatataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaa 206  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||    
T  1551 atgtgattatggcctcctaatgttagaaatgaaaacatattt--tataaaaacatgttcaattattatgaatcaatagtctaagcaaacagaacattgaa 1454  T
Q  207 ta----cgattatgctcagatttacgacatgtttgatttatcaagtatattaataataagtattagaatacctggaactttgatgtccatctca 296  Q
    ||      ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  1453 tattgtatattatgctcggatttacgacatgtttgattaatcaaatatattaataataagtattagaatacctggaactttgatggccctctca 1360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 9935418 - 9935318
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  9935418 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaaggatatta 9935319  T
Q  255 a 255  Q
    |    
T  9935318 a 9935318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 36819107 - 36819018
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||||||||| |||||| |||||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||    
T  36819107 acatgttcaacaattatgaatcaatagtggaagcaaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaag 36819018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 5542183 - 5542280
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  5542183 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 5542280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 14799439 - 14799528
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  14799439 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 14799528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 32891025 - 32890928
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  32891025 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaa 32890928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 32897149 - 32897052
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  32897149 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaa 32897052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 42993027 - 42993116
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  42993027 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 42993116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 14418063 - 14417980
Alignment:
Q  172 tatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  14418063 tatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 14417980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 7771368 - 7771271
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  7771368 acatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaa 7771271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 22219736 - 22219837
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaac-aaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatt 253  Q
    ||||||||||||||  |||||||| |||||  |||| |||  ||||| ||||| | ||||||| || ||| ||||||||||||||||||||||| |||||    
T  22219736 aaaacatgttcaatagttatgaatcaatagcagaagaaaaagaaaactttgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatt 22219835  T
Q  254 aa 255  Q
    ||    
T  22219836 aa 22219837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 39735572 - 39735672
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||| ||| |||| |||||| | ||||||| |   || ||||||||||||||||||||||  ||||||    
T  39735572 aaaacatgttcaacaattatgaatcaatagcggaagtaaataaaatattgaacatgattatgattgtatctacgacatgtttgatttatcaaagatatta 39735671  T
Q  255 a 255  Q
    |    
T  39735672 a 39735672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 10700127 - 10700076
Alignment:
Q  196 aaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  10700127 aaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 10700076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 39727340 - 39727401
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatg 216  Q
    |||||||||||||  ||||||||| ||||   |||||||||||||||||||| | |||||||    
T  39727340 aaaacatgttcaacaattatgaatcaataacggaagcaaacaaaacattgaacatgattatg 39727401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10238232 - 10238332
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  10238232 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcagatctacgacatgtttgatttatcaaggatatta 10238331  T
Q  255 a 255  Q
    |    
T  10238332 a 10238332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10244354 - 10244454
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  10244354 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 10244453  T
Q  255 a 255  Q
    |    
T  10244454 a 10244454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 11846069 - 11846183
Alignment:
Q  138 aaaacagattttatataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttg 237  Q
    |||||||||||||||   | ||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||    
T  11846069 aaaacagattttata---atacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttg 11846165  T
Q  238 atttatcaagtatattaa 255  Q
    ||||||||||||||||||    
T  11846166 atttatcaagtatattaa 11846183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 11839748 - 11839845
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  11839748 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 11839845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 8331926 - 8331826
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  8331926 aaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 8331827  T
Q  255 a 255  Q
    |    
T  8331826 a 8331826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 17055813 - 17055913
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||| ||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  17055813 aaaatatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 17055912  T
Q  255 a 255  Q
    |    
T  17055913 a 17055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 30051122 - 30051222
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  ||||||||||||| |||||| | ||||||  |||||| ||||||||||||||||||||||| ||||||    
T  30051122 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaatattgaacatgattataatcagatctacgacatgtttgatttatcaaggatatta 30051221  T
Q  255 a 255  Q
    |    
T  30051222 a 30051222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 55003432 - 55003532
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||| ||||||||||| | ||||||| || ||| |||||||||||| |||||||||||||||||    
T  55003432 aaaacatgttcaacaattatgaatcaatagcagaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttaatttatcaagtatatta 55003531  T
Q  255 a 255  Q
    |    
T  55003532 a 55003532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 49151748 - 49151651
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||| ||| |||||||    
T  49151748 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaa 49151651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 49157815 - 49157718
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||| ||| |||||||    
T  49157815 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaa 49157718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 53069060 - 53069174
Alignment:
Q  138 aaaacagattttatataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttg 237  Q
    |||||||||||||||   ||||||||||||  ||||| |||  ||||  |||||||||||||||||||| | ||||||| || ||| || ||||||||||    
T  53069060 aaaacagattttata---aaacatgttcaacaattataaatcgatagcggaagcaaacaaaacattgaacatgattatgatcggatctatgacatgtttg 53069156  T
Q  238 atttatcaagtatattaa 255  Q
    |||||||||| |||||||    
T  53069157 atttatcaaggatattaa 53069174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 10760673 - 10760770
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| |||||  |||||||| ||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  10760673 acatgttcaacaattataaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 10760770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 38449086 - 38449183
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||| ||||||||||||||||||| |||||||    
T  38449086 acatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatattaa 38449183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 38455573 - 38455670
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||| ||||||||||||||||||| |||||||    
T  38455573 acatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatattaa 38455670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 48128068 - 48128167
Alignment:
Q  156 aaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||||  ||||||||| |||||  ||| |||||||||||||||| | ||||||| || | | ||||||||||||||||||| ||| |||||||    
T  48128068 aaacatgttcaacaattatgaatcaatagcggaaacaaacaaaacattgaacatgattatgatcggttctacgacatgtttgatttattaagaatattaa 48128167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 10766894 - 10766991
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| || ||  |||||||||||||||||||| | |||||||  | ||| ||||||||||||||||||||||| |||||||    
T  10766894 acatgttcaacaattataaatcaacagcggaagcaaacaaaacattgaacatgattatgaccggatctacgacatgtttgatttatcaaggatattaa 10766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 28964989 - 28964916
Alignment:
Q  173 atgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaa 246  Q
    |||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||    
T  28964989 atgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa 28964916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 42191243 - 42191332
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||| ||||| |||||  ||||||||||||||||||||   ||||||| || ||| |||||||||||||||||||||||    
T  42191243 acatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaag 42191332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 42197185 - 42197274
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||| ||||| |||||  ||||||||||||||||||||   ||||||| || ||| |||||||||||||||||||||||    
T  42197185 acatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaag 42197274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 17593334 - 17593402
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||||||||||||||| | ||||||| || ||| |||||||||||| |||||||||| |||||||    
T  17593334 gaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttaatttatcaagaatattaa 17593402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 34300604 - 34300536
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||||||||||||||| | ||||||| || ||| |||||||| |||||||||| ||| |||||||    
T  34300604 gaagcaaacaaaacattgaacatgattatgatcggatctacgacatatttgatttataaaggatattaa 34300536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 46656823 - 46656732
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaa 246  Q
    |||||||||||||| | ||||||| |||||  |||| ||| |||||||| ||||  |||||| || ||| ||||| ||||||||||||||||    
T  46656823 aaaacatgttcaataaatatgaattaatagctgaagtaaataaaacattcaatataattatgatcggatctacgatatgtttgatttatcaa 46656732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 12108719 - 12108788
Alignment:
Q  187 gaagcaaa-caaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||| |||||||||||||| ||||||| |  ||| || |||||||||||||||||||| |||||||    
T  12108719 gaagcaaatcaaaacattgaatatgattatgatttgatctaagacatgtttgatttatcaaggatattaa 12108788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 13445144 - 13445100
Alignment:
Q  211 attatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||| || ||| ||||||||||||||||||||||| |||||||    
T  13445144 attatgatcggatctacgacatgtttgatttatcaaggatattaa 13445100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 5674 - 5574
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  5674 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 5575  T
Q  255 a 255  Q
    |    
T  5574 a 5574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 339510 - 339410
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  339510 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 339411  T
Q  255 a 255  Q
    |    
T  339410 a 339410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 3811192 - 3811289
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  3811192 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 3811289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 3817334 - 3817431
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  3817334 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 3817431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 351925 - 351825
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| || ||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  351925 aaaacatgttcaacaattatgaatcaacagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 351826  T
Q  255 a 255  Q
    |    
T  351825 a 351825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 28420979 - 28421079
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  28420979 aaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 28421078  T
Q  255 a 255  Q
    |    
T  28421079 a 28421079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 42767318 - 42767415
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  ||||||||||||| |||||| | ||||||| || ||| |||||||| |||||||||||||| |||||||    
T  42767318 acatgttcaacaattatgaatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatatttgatttatcaaggatattaa 42767415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 12804139 - 12804039
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| |||||||||| |||||  ||||||| |||||||||||| | ||  |||  | ||| ||||||||||||||||||||||| ||||||    
T  12804139 aaaacatgttcaacgattatgaatcaatagcggaagcaagcaaaacattgaacatgaacatgaacggatctacgacatgtttgatttatcaagaatatta 12804040  T
Q  255 a 255  Q
    |    
T  12804039 a 12804039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 20239058 - 20238990
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  20239058 gaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 20238990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 35148024 - 35148124
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||| |||  ||||  |||||||||||||||||||| | ||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  35148024 aaaacatgttcaacaattataaatcgatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacacgtttgatttatcaaggatatta 35148123  T
Q  255 a 255  Q
    |    
T  35148124 a 35148124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 5849668 - 5849567
Alignment:
Q  151 tataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtat 250  Q
    |||||||  ||||||||||||||||||| |||||  ||||||| |||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| ||    
T  5849668 tataaaattatgttcaatgattatgaatcaatagcggaagcaaccaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggat 5849569  T
Q  251 at 252  Q
    ||    
T  5849568 at 5849567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 43540122 - 43540024
Alignment:
Q  157 aacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||||||| ||||||||| |||||  |||  ||| |||| |||||| | ||||||| || ||| ||| ||||||||||||||||||| |||||||    
T  43540122 aacatgttcaataattatgaatcaatagcggaattaaataaaatattgaacatgattatgatcggatctacaacatgtttgatttatcaagaatattaa 43540024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 18666548 - 18666619
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaataat 259  Q
    ||||||||||||||||||||   ||||||| ||||||| ||||||||||||||||| |||  |||||||||||    
T  18666548 gaagcaaacaaaacattgaacttgattatgatcagatt-acgacatgtttgatttagcaatgatattaataat 18666619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 22741977 - 22742037
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||  ||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  22741977 gaagcaaactgaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 22742037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 26383762 - 26383673
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||||||||| || |   ||| ||||||||| |||||| | ||| ||| || ||| |||||||||||||||||||||||    
T  26383762 acatgttcaacaattatgaatcaacaacagaaacaaacaaaatattgaacatgatcatgatcggatctacgacatgtttgatttatcaag 26383673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 30219269 - 30219354
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttat 243  Q
    ||||||||||| ||||||||| | |||  ||| |||||||||| ||||| | || ||||  | ||| |||||||||||||||||||    
T  30219269 acatgttcaataattatgaatcattagcggaatcaaacaaaacgttgaacatgaatatgaacggatctacgacatgtttgatttat 30219354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 8650823 - 8650923
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  8650823 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 8650922  T
Q  255 a 255  Q
    |    
T  8650923 a 8650923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 8662801 - 8662901
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  8662801 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 8662900  T
Q  255 a 255  Q
    |    
T  8662901 a 8662901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 32035306 - 32035398
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  32035306 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 32035398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 21782776 - 21782873
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  21782776 acatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 21782873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 21197041 - 21197165
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| |||||||||| |||||  |||||||||||||||||||| |  | ||||  | ||| ||| ||||||||||||||||||| |||| |    
T  21197041 aaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataagtatgaacggatctacaacatgtttgatttatcaaggatatca 21197140  T
Q  255 ataataagtatta-gaatacctgga 278  Q
    | ||| ||||||| |||||||||||    
T  21197141 agaattagtattatgaatacctgga 21197165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 4580344 - 4580441
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  | ||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  4580344 acatgttcaacaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaa 4580441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 18778725 - 18778623
Alignment:
Q  152 ataaaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtata 251  Q
    ||||||||||||||||| ||||||||| |||||  |||||||||||||| ||||| |  |||||| || ||| |||||| | ||||||||||||| ||||    
T  18778725 ataaaaacatgttcaataattatgaatcaatagcggaagcaaacaaaacgttgaacataattatgatcggatctacgacgtatttgatttatcaa-tata 18778627  T
Q  252 ttaa 255  Q
    ||||    
T  18778626 ttaa 18778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 21190886 - 21190986
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||| ||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||| || |||||||||||||  ||||||    
T  21190886 aaaatatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgatatatttgatttatcaaagatatta 21190985  T
Q  255 a 255  Q
    |    
T  21190986 a 21190986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 17581765 - 17581673
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||  |||||||||  ||||  |||||||||||||||||||| | ||||||  |  ||| |||||||||||||||||| ||||    
T  17581765 aaaacatgttcaactattatgaatcgatagcggaagcaaacaaaacattgaacatgattattataggatctacgacatgtttgatttaccaag 17581673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 25343731 - 25343671
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||||||||| | ||||||| || ||| |||||||| ||||||||||||||    
T  25343731 gaagcaaacaaaacattgaacatgattatgatcggatctacgacatttttgatttatcaag 25343671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 25354318 - 25354258
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||| ||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  25354318 gaagcaaacaaagcattgaacatgattatgatcggatctacgacatgtttgatttatcaag 25354258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 31756235 - 31756335
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| || |   |||||||| ||||||||||| | ||||||  || ||| |||||||||||||| |||||||| ||||||    
T  31756235 aaaacatgttcaacaattatgaatcaacaacggaagcaaataaaacattgaacatgattataatcggatctacgacatgtttgaattatcaaggatatta 31756334  T
Q  255 a 255  Q
    |    
T  31756335 a 31756335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 21783361 - 21783451
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaataataagtatta-gaatacctg 276  Q
    |||||||||||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| |||| || ||| ||||||| |||||||||    
T  21783361 gaagcaaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattagtattaggaatacctg 21783451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 21789584 - 21789674
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaataataagtatta-gaatacctg 276  Q
    |||||||||||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| |||| || ||| ||||||| |||||||||    
T  21789584 gaagcaaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattagtattaggaatacctg 21789674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 34603366 - 34603450
Alignment:
Q  170 attatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||| ||||| ||||||||||||| ||||||| |  |||||| || ||| || | |||||||||||||||||| |||||||    
T  34603366 attatgaataaatag-cgaagcaaacaaagcattgaacataattatgatcggatctatggcatgtttgatttatcaaggatattaa 34603450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 34724643 - 34724727
Alignment:
Q  170 attatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||| ||||| ||||||||||||| ||||||| |  |||||| || ||| || | |||||||||||||||||| |||||||    
T  34724643 attatgaataaatag-cgaagcaaacaaagcattgaacataattatgatcggatctatggcatgtttgatttatcaaggatattaa 34724727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 21770610 - 21770691
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaataataagtattag 268  Q
    |||| ||||||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| |||| || ||| ||||||||    
T  21770610 gaagtaaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattagtattag 21770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 35084696 - 35084796
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  35084696 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaaaatgattatgatcggatctacgacatgtttgatttatcaagaatatta 35084795  T
Q  255 a 255  Q
    |    
T  35084796 a 35084796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 35090669 - 35090769
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  35090669 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatatta 35090768  T
Q  255 a 255  Q
    |    
T  35090769 a 35090769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 36750554 - 36750454
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  36750554 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 36750455  T
Q  255 a 255  Q
    |    
T  36750454 a 36750454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 28682965 - 28683057
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  28682965 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 28683057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 13456236 - 13456147
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||| ||||| |||||  ||||||||||||||||||||   ||||||| || ||| |||||||||||||||||||||||    
T  13456236 acatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaag 13456147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 13462177 - 13462088
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||| ||||| |||||  ||||||||||||||||||||   ||||||| || ||| |||||||||||||||||||||||    
T  13462177 acatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaag 13462088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 13149738 - 13149798
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  13149738 gaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 13149798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 23343700 - 23343600
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| ||||| |||| || ||  |||||||||||||||||||| | || ||||  |  || ||||||||||||||||||||||| ||||||    
T  23343700 aaaacatgttcaacgattacgaatcaacagcggaagcaaacaaaacattgaacatgaatatgaacgaatctacgacatgtttgatttatcaaggatatta 23343601  T
Q  255 a 255  Q
    |    
T  23343600 a 23343600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 35438729 - 35438816
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgattta 242  Q
    |||||||||||||   |||||||| |||||  |||||||| ||||||||||| | ||||||| || ||| ||||||||||||||||||    
T  35438729 aaaacatgttcaacagttatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgattta 35438816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 30965464 - 30965367
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  || || ||| |||||  ||||||||||||| |||||| | ||||||| || ||| |||||||||||||||||||||| ||| ||||    
T  30965464 acatgttcaacaatcataaatcaatagcggaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaattattttaa 30965367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 31002484 - 31002419
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatat 252  Q
    ||||||||||||| |||||| | ||||||| || ||| ||||||||||||||||||||||| ||||    
T  31002484 gaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatat 31002419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 31008462 - 31008397
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatat 252  Q
    ||||||||||||| |||||| | ||||||| || ||| ||||||||||||||||||||||| ||||    
T  31008462 gaagcaaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatat 31008397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 44716824 - 44716925
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaac-aaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatt 253  Q
    ||||||||||||| | |||| ||| |||||  ||||||||  ||||||||||| | ||||||| || ||| |||||||||||||||||| |||| |||||    
T  44716824 aaaacatgttcaacggttatcaatcaatagcggaagcaaaagaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatatt 44716923  T
Q  254 aa 255  Q
    ||    
T  44716924 aa 44716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 11048573 - 11048673
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||| |||  ||||||||| |||||  |||||||||||||||||||| | ||||||| |  ||| |||| |||||||||| || |||| ||||||    
T  11048573 aaaacatgtccaacaattatgaatcaatagctgaagcaaacaaaacattgaacatgattatgattggatatacgtcatgtttgatgtaccaaggatatta 11048672  T
Q  255 a 255  Q
    |    
T  11048673 a 11048673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 14610288 - 14610183
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||| ||| ||||||| | ||||||| || ||||||||||||||||||||||||||| ||||||    
T  14610288 aaaacatgttcaacaattatgaattaatagcggaagcaaataaaccattgaacatgattatgatcggatttacgacatgtttgatttatcaaggatatta 14610189  T
Q  255 ataata 260  Q
    | ||||    
T  14610188 agaata 14610183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 12686199 - 12686299
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  12686199 aaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 12686298  T
Q  255 a 255  Q
    |    
T  12686299 a 12686299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 12692301 - 12692401
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  12692301 aaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 12692400  T
Q  255 a 255  Q
    |    
T  12692401 a 12692401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 30384398 - 30384504
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| ||||||||| || ||| || ||||||| |||||||||||| ||||||    
T  30384398 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacacgattatgatcggatcta-gacatgtctgatttatcaaggatatta 30384496  T
Q  255 ataataag 262  Q
    | ||||||    
T  30384497 agaataag 30384504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 28525409 - 28525506
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||| ||| |||||||    
T  28525409 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaa 28525506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 28531505 - 28531602
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||| ||| |||||||    
T  28531505 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaa 28531602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 24054474 - 24054374
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||| |||  ||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  24054474 aaaacatgttcaacaattataaatctatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 24054375  T
Q  255 a 255  Q
    |    
T  24054374 a 24054374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 158 - 252
Target Start/End: Complemental strand, 41297413 - 41297319
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatat 252  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| |  |||||| || ||| ||||||||||||||||||||||| ||||    
T  41297413 acatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaaggatat 41297319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 7389571 - 7389660
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||| || |||  ||||||||||||||||||||||    
T  7389571 acatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatccacgacatgtttgatttatcaag 7389660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 30772423 - 30772322
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaac-aaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatt 253  Q
    |||||||||||||| ||||||||| || ||| ||||||||| |||||| |||| | ||||||| || |||  || ||||||||||||||||||| |||||    
T  30772423 aaaacatgttcaataattatgaataaacagtggaagcaaacaaaaacaatgaacatgattatgatcggatcgacaacatgtttgatttatcaaggatatt 30772324  T
Q  254 aa 255  Q
    ||    
T  30772323 aa 30772322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 32094212 - 32094280
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||||||||||||||| | ||||||| |  ||| ||||||||||||||||||||||| |||||||    
T  32094212 gaagcaaacaaaacattgaacatgattatgataggatctacgacatgtttgatttatcaaggatattaa 32094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 32097013 - 32097081
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||||||||||||||| | ||||||| |  ||| ||||||||||||||||||||||| |||||||    
T  32097013 gaagcaaacaaaacattgaacatgattatgataggatctacgacatgtttgatttatcaaggatattaa 32097081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 16215209 - 16215294
Alignment:
Q  170 attatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||| |||||  ||||||||||||||||| || | ||||||| |  ||| ||||| ||||||||||||||||| |||||||    
T  16215209 attatgaatcaatagcggaagcaaacaaaacatttaacatgattatgattggatctacgaaatgtttgatttatcaaggatattaa 16215294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 19066131 - 19066227
Alignment:
Q  159 catgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||| |||||| ||| | |||  ||||||||||||||||| |  | || ||||  | ||| ||||||||||||||||||||||| |||||||    
T  19066131 catgttcaacgattataaatcattagcggaagcaaacaaaacattaagcatgaatatgaacggatctacgacatgtttgatttatcaaggatattaa 19066227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 26316812 - 26316901
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatc 244  Q
    |||||||||||||| ||| | ||| |||||| |||||||| ||||||||||| |  | |||| |  ||| || |||||||||||||||||    
T  26316812 aaaacatgttcaataattttaaattaatagtggaagcaaaaaaaacattgaacattaatatgattggatctaggacatgtttgatttatc 26316901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 26509986 - 26509938
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaa 206  Q
    |||||||||||||| ||||||||   ||||| ||||||||||||||||||||    
T  26509986 aaaacatgttcaatcattatgaa---atagtggaagcaaacaaaacattgaa 26509938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 37896373 - 37896422
Alignment:
Q  210 gattatgctcagatttacgacatgtttgatttatcaagtatattaataat 259  Q
    ||||||| || ||| ||||||||| ||||||||||||| |||||||||||    
T  37896373 gattatgatcggatctacgacatgattgatttatcaagaatattaataat 37896422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 25387524 - 25387624
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  | ||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  25387524 aaaacatgttcaacaaatatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 25387623  T
Q  255 a 255  Q
    |    
T  25387624 a 25387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 34740125 - 34740025
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||   ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| ||||||    
T  34740125 aaaacatgttcatcaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatatta 34740026  T
Q  255 a 255  Q
    |    
T  34740025 a 34740025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 44410149 - 44410025
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| |||||||||| |||||  |||||||||||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| |||| |    
T  44410149 aaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatca 44410050  T
Q  255 ataataagtatta-gaatacctgga 278  Q
    | ||| ||||||| |||||||||||    
T  44410049 agaattagtattaggaatacctgga 44410025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 50306328 - 50306236
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||  ||||||||| |||||  |||||||||||||||||||| | ||||||  || ||| |||||||||||||||||||||||    
T  50306328 aaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattataatcggatctacgacatgtttgatttatcaag 50306236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 1078360 - 1078263
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  ||||| ||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  1078360 acatgttcaacaattattaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaagaatattaa 1078263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 24926774 - 24926874
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| |||||||||| |||||  ||||||| |||||||||||| |  | ||||  | ||| ||||||||||||||||||||||| ||||||    
T  24926774 aaaacatgttcaacgattatgaatcaatagcggaagcaaccaaaacattgaacattaatatgaacggatctacgacatgtttgatttatcaagaatatta 24926873  T
Q  255 a 255  Q
    |    
T  24926874 a 24926874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 24963722 - 24963846
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||||| || ||||||| |||||  |||||||||||||||||||| | || ||||  | ||| |||| |||||||||||||||||| ||| ||    
T  24963722 aaaacatgttcaacgaatatgaatcaatagcggaagcaaacaaaacattgaacatgaatatgaacggatctacgccatgtttgatttatcaagaatagta 24963821  T
Q  255 ataat--aagtatta-gaatacctg 276  Q
    | |||  |||||||| |||||||||    
T  24963822 agaattaaagtattaggaatacctg 24963846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 25381558 - 25381655
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||  | ||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||| |||||||||||| |||| |||||||    
T  25381558 acatgttcaacaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgaaatgtttgatttaccaaggatattaa 25381655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 31058151 - 31058091
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||||||||| | ||||||| || ||| |||||||||||||||||||||||    
T  31058151 gaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 31058091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 12183619 - 12183696
Alignment:
Q  170 attatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    ||||||||| |||||| ||||||||||||| |||||| |  |||||| |  ||| |||||||||||||||||||||||    
T  12183619 attatgaatcaatagtggaagcaaacaaaatattgaacataattatgattggatctacgacatgtttgatttatcaag 12183696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 8092898 - 8092966
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||| ||||||||||| | ||||||| || ||| || |||||||||||||||||||| |||||||    
T  8092898 gaagcaaataaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaa 8092966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 31051651 - 31051591
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaag 247  Q
    |||||||||||||||||||| | ||||||| |  ||| |||||||||||||||||||||||    
T  31051651 gaagcaaacaaaacattgaacatgattatgattggatctacgacatgtttgatttatcaag 31051591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 27955268 - 27955216
Alignment:
Q  187 gaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgat 239  Q
    |||||||||||||||||||| | ||||||| || ||| ||| |||||||||||    
T  27955268 gaagcaaacaaaacattgaacatgattatgatcggatctacaacatgtttgat 27955216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 172910 - 173010
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    ||||||||||| |  ||||||||| |||||  |||||||||||||||||||| | ||||||| || ||| |||||||||||| |||||||||| ||||||    
T  172910 aaaacatgttctacaattatgaatcaatagcggaagcaaacaaaacattgaaaatgattatgatcggatctacgacatgtttaatttatcaaggatatta 173009  T
Q  255 a 255  Q
    |    
T  173010 a 173010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 656 - 739
Alignment:
Q  172 tatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||| |||||  |||||||||||||||||||| | ||||||| || ||| ||||||||||||||||||||||| |||||||    
T  656 tatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaa 739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 1214 - 1314
Alignment:
Q  155 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatatta 254  Q
    |||||||||||||  ||||||||| ||  |  |||||||||||||||||||| | ||||||| || ||| ||||| ||||||||||||||||| ||||||    
T  1214 aaaacatgttcaacaattatgaatcaaaggcggaagcaaacaaaacattgaacatgattatgatcggatctacgatatgtttgatttatcaaggatatta 1313  T
Q  255 a 255  Q
    |    
T  1314 a 1314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 12519 - 12435
Alignment:
Q  171 ttatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||| |||||  |||||||| ||||||||||| |  |||||| ||  || ||||||||||||||||||||||| |||||||    
T  12519 ttatgaatcaatagcggaagcaaataaaacattgaacataattatgatcgaatctacgacatgtttgatttatcaaggatattaa 12435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 6646 - 6562
Alignment:
Q  171 ttatgaatgaatagtcgaagcaaacaaaacattgaatacgattatg-ctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    |||||||| |||||  |||||||||||||||||||| | ||||||| || | || ||| ||||||||||||||||||| |||||||    
T  6646 ttatgaatcaatagcggaagcaaacaaaacattgaacatgattatgactga-atctacaacatgtttgatttatcaaggatattaa 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 6061 - 5958
Alignment:
Q  156 aaacatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaa 255  Q
    ||||||||||||| ||||| ||| |||||  | |  ||||||||||||||| | || |||| || ||| ||||||||||||||||||||||  ||||||     
T  6061 aaacatgttcaataattattaatcaatagcggcattaaacaaaacattgaacatgaatatgatcggatctacgacatgtttgatttatcaaaaatattat 5962  T
Q  256 taat 259  Q
    ||||    
T  5961 taat 5958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 38564 - 38443
Alignment:
Q  158 acatgttcaatgattatgaatgaatagtcgaagcaaacaaaacattgaatacgattatgctcagatttacgacatgtttgatttatcaagtatattaata 257  Q
    ||||||||||| ||||  ||| || ||| |||||||||||||||||||| |   ||||| || ||| ||| ||||||||| ||||||||| |||||||||    
T  38564 acatgttcaatcattagaaatcaacagtggaagcaaacaaaacattgaacatagttatgatcggatctacaacatgtttg-tttatcaagaatattaata 38466  T
Q  258 a-taagtatta-gaatacctgga 278  Q
    | || |||||| |||||||||||    
T  38465 attaggtattaggaatacctgga 38443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University