View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_61 (Length: 300)

Name: NF11854_low_61
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_61
NF11854_low_61
[»] chr2 (1 HSPs)
chr2 (17-300)||(41998021-41998304)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 41998304 - 41998021
Alignment:
Q  17 atttctcgtatttaccgtttagcagatctcgatctatcaagaaaccaagtttctgggcccatacctgagtccctaggtaaaatggcggttttgtccacac 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41998304 atttctcgtatttatcgtttagcagatctcgatctatcaagaaaccaagtttctggacccatacctgagtccctaggtaaaatggcggttttgtccacac 41998205  T
Q  117 ttaatttggacatgaacaaaatttctggtcccattccaataagtctttttaattctggaataagtgatttaaatttaagccgaaatggtttagaagggac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41998204 ttaatttggacatgaacaaaatttctggtcccattccaataagtctttttaattctggaataagtgatttaaatttaagccgaaatggtttagaagggac 41998105  T
Q  217 tatacctgatgtgtttggtgtgagatcttatttcacggttttggatttgagttataatcatcttaagggtcctatacctaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41998104 tatacctgatgtgtttggtgtgagatcttatttcacggttttggatttgagttataatcatcttaagggtcctatacctaaatc 41998021  T

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