View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_62 (Length: 297)
Name: NF11854_low_62
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_62 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 91466 - 91738
Alignment:
| Q |
8 |
gacgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagatt |
107 |
Q |
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| T |
91466 |
gacgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagatt |
91565 |
T |
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| Q |
108 |
ggttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtgaaaagggtaaagagatgaaagaaaaagctttgg |
207 |
Q |
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| T |
91566 |
ggtttggagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtgaaaagggtaaagagatgaaagcaaaagctttgc |
91665 |
T |
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| Q |
208 |
aatggaagaaattggcacacaatgctgcttctggtccacatggatcatcctttatgaatctggagaacctctt |
280 |
Q |
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| T |
91666 |
aatggaagaaattggcacacaatgctgcttctggtccacatggatcatcctttatgaatctggagaacctctt |
91738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 26672175 - 26671906
Alignment:
| Q |
9 |
acgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagattg |
108 |
Q |
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| T |
26672175 |
acgttggaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattg |
26672076 |
T |
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| Q |
109 |
gttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtgaaaagggtaaagagatgaaagaaaaagctttgga |
208 |
Q |
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| T |
26672075 |
gtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagttaatggaaggagaaaagggtaaagagatgaaagaaaaagctttgca |
26671976 |
T |
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| Q |
209 |
atggaagaaattggcacacaatgctgcttctggtccacatggatcatcctttatgaatctggagaacctc |
278 |
Q |
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| T |
26671975 |
atggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctc |
26671906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 26943773 - 26943504
Alignment:
| Q |
9 |
acgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagattg |
108 |
Q |
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| T |
26943773 |
acgttggaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattg |
26943674 |
T |
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| Q |
109 |
gttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtgaaaagggtaaagagatgaaagaaaaagctttgga |
208 |
Q |
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| T |
26943673 |
gtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagttaatggaaggagaaaagggtaaagagatgaaagaaaaagctttgca |
26943574 |
T |
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| Q |
209 |
atggaagaaattggcacacaatgctgcttctggtccacatggatcatcctttatgaatctggagaacctc |
278 |
Q |
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| T |
26943573 |
atggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctc |
26943504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 26901461 - 26901264
Alignment:
| Q |
9 |
acgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaactaattgtaggttttgttgtaatgagtgggagattg |
108 |
Q |
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| T |
26901461 |
acgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattg |
26901362 |
T |
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| Q |
109 |
gttttgagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtgaaaagggtaaagagatgaaagaaaaagctttg |
206 |
Q |
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| T |
26901361 |
gtttggaaattgaagatgctaagagggataaaattgagattcttgtgaaggagttaatggaaggagaaaagggtaaagaaatgaaagagaaagctttg |
26901264 |
T |
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