View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_65 (Length: 292)
Name: NF11854_low_65
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 25483794 - 25484067
Alignment:
| Q |
3 |
cagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga |
102 |
Q |
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| T |
25483794 |
cagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga |
25483893 |
T |
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| Q |
103 |
cggttttatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaattaacggttttaaaccctaatccccaaagaagatttgaatatggtatg |
202 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25483894 |
cggtttgatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaataaacggttttaaaccctaatcccccaagaagatttgaatatggtatg |
25483993 |
T |
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| Q |
203 |
aacaagatttgaaaaggactaaaatcaccttgagcaaataaagaatgatagagaaaatacctgaatgaaaattc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25483994 |
aacaagatttgaaaaggactaaaatcaccttgagcaaagaaagaatgatagagaaaatacctgaatgaaaattc |
25484067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 25860206 - 25859933
Alignment:
| Q |
3 |
cagagaccacaaccgagaattatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga |
102 |
Q |
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| T |
25860206 |
cagagaccacaaccgagatttatgaaagaacaaaaatagtaaaataaaaccaacaaattatcgatttaatgatgttaataataatactcaatgtgattga |
25860107 |
T |
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| Q |
103 |
cggttttatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaattaacggttttaaaccctaatccccaaagaagatttgaatatggtatg |
202 |
Q |
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| T |
25860106 |
cggtttgatttcatgaaaaaacagtcaatctctcaccttaaaaaagccctaattaacggttttaaaccctaatcccccaagaagatttgaatatggtatg |
25860007 |
T |
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| Q |
203 |
aacaagatttgaaaaggactaaaatcaccttgagcaaataaagaatgatagagaaaatacctgaatgaaaattc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25860006 |
aacaagatttgaaaaggactaaaatcaccttgagcaaagaaagaatgatagagaaaatacctgaatgaaaattc |
25859933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 25604163 - 25604126
Alignment:
| Q |
142 |
aaaaaagccctaattaacggttttaaaccctaatcccc |
179 |
Q |
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|||||||||| |||||| |||||||||||||||||||| |
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| T |
25604163 |
aaaaaagccccaattaaaggttttaaaccctaatcccc |
25604126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 25886268 - 25886231
Alignment:
| Q |
142 |
aaaaaagccctaattaacggttttaaaccctaatcccc |
179 |
Q |
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|||||||||| |||||| |||||||||||||||||||| |
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| T |
25886268 |
aaaaaagccccaattaaaggttttaaaccctaatcccc |
25886231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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