View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_74 (Length: 276)
Name: NF11854_low_74
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 44200333 - 44200596
Alignment:
| Q |
1 |
taggtcttggtggcttgtttgtattatgctctcccattatgattgagaagtattagtaatcatgtttaattatttaacggcatggtgtttgtctgtttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44200333 |
taggtcttggtggcttgtttgtattatgctctcccattatgattgagaagtattagtaatcatgtttaattatttaacggcatggtgtttgtctgtttgg |
44200432 |
T |
|
| Q |
101 |
ttaatatctgataacctattcttttgacaaagttggcttttaaaaacagttggttttctgcaattaactcgctagttcaagtgagccaataatttataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44200433 |
ttaatatctgataacctattcttttgacaaagttggcttttaaaaacggttggttttctgcaattaactcgctagttcaagtgagccaataatttataat |
44200532 |
T |
|
| Q |
201 |
gatttactttgccattccttccccttgctccacatatgaaatggaaatgatttttgtgttgtct |
264 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44200533 |
gatttgctttgccattccttccccttgctccacatatgaaatggaaatgatttttgtgttgtct |
44200596 |
T |
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