View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_76 (Length: 271)
Name: NF11854_low_76
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 44975774 - 44975538
Alignment:
| Q |
19 |
atttatacactttatagaaaatcaaatgaaataacaaaaccagttcatacaaaagtaaggatcagaattgaagaaaattcataattatatgcttatcctt |
118 |
Q |
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| T |
44975774 |
atttatacactttatagaaaatcaaatgaaataacaaaaccagttcatacaaaagtaaggatcagaattgaagaaaattcataattatatgcttatcctt |
44975675 |
T |
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| Q |
119 |
ttcaccaataggccttcaagttttggatcttgaaacccttctaagtaaaaccaagaaacaaagcacacggtaaaaaacaaagaacccaatcaaaaagtac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975674 |
ttcaccaataggccttcaagttttggatcttgaaacccttctaagtaaaaccaagaaacaaagcacacggtaaaaaacaaagaacccaatcaaaaagtac |
44975575 |
T |
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| Q |
219 |
acattggtccatctctgtccctcatggagccctctct |
255 |
Q |
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| T |
44975574 |
acattggtccatctctgtccctcatggagccctctct |
44975538 |
T |
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