View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_82 (Length: 261)
Name: NF11854_low_82
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40484395 - 40484153
Alignment:
| Q |
1 |
tcctttaagagtggtatggataatcagataatgtgatagt-taagacttcttgtaggacaaatttacataccagcctcctctgctaacagtatccttttc |
99 |
Q |
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| T |
40484395 |
tcctttaagagtggtatggataatcatataatgtgatagtgtaagacttcttgtaggacaaatttacataccagcctcctctgctaacagtatccttttc |
40484296 |
T |
|
| Q |
100 |
aaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaagacctgcctgtagtgcaacagctaaaattaacacgggatccttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40484295 |
aaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaagacctgcctgtagtgcaacagctaaaattaacacgggatccttt |
40484196 |
T |
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| Q |
200 |
gtatatttaacaacaacttcaacttataaacgaacacattact |
242 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40484195 |
gtatatttaacaaaaacttcaacttataaacgaacacattact |
40484153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 40484127 - 40484085
Alignment:
| Q |
200 |
gtatatttaacaacaacttcaacttataaacgaacacattact |
242 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
40484127 |
gtatatttaacaaaaacttcaacttataaatgaacacattact |
40484085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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