View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11854_low_83 (Length: 259)
Name: NF11854_low_83
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7333569 - 7333812
Alignment:
| Q |
1 |
tccactccctatcacctcattacatactctctcctttaaccacctagagaatattcgtgccaccttctttttccagacatacactttccaaatagctggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7333569 |
tccactccctatcacctcattacatactctctcctttaaccacctagagaatattcgtgccaccttctttttccagacataaactttccaaatagctggc |
7333668 |
T |
|
| Q |
101 |
ctatgagggtccacaccgtatccacatgaaagtcaaatcaggcctatgagttctatcagaaaaccgtaacaaaaattcatcaatgcaaaacaaacttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333669 |
ctatgagggtccacaccgtatccacatgaaagtcaaatcaggcctatgagttctatcagaaaaccgtaacaaaaattcatcaatgcaaaacaaacttatc |
7333768 |
T |
|
| Q |
201 |
caggcctaatacgtttcaaattctataacatattcagtttagtt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333769 |
caggcctaatacgtttcaaattctataacatattcagtttagtt |
7333812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 12427084 - 12427018
Alignment:
| Q |
63 |
ccttctttttccagacatacactttccaaatagctggcctatgagggtccacacc-gtatccacatg |
128 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||| |||||| ||||| ||||| ||||||||||| |
|
|
| T |
12427084 |
ccttccttttcctgacatacactttccaaattgctgacctatgggggtcaacaccagtatccacatg |
12427018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University