View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_89 (Length: 250)
Name: NF11854_low_89
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38561349 - 38561108
Alignment:
| Q |
1 |
taacatatgacatgatatttagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacgtatagcatttataaagtaaga |
100 |
Q |
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| T |
38561349 |
taacatatgatatgatatttagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacatatagcatttataaagtaaga |
38561250 |
T |
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| Q |
101 |
gtttgagagtgaagtcaaaatgaacatgtcattatgtcaccttcacatcacccattttgcatatatacatgaaaatcttgaattcacgtacacacttgcc |
200 |
Q |
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| T |
38561249 |
gtttgagagtgaagtcaacatgaacatgtcactatgtcaccttcacagcacccattttgcatatatacatgaaaatcttgaattcacgtacacacttgcc |
38561150 |
T |
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| Q |
201 |
ttctctctattgtgttgcgtgagtggatatttgttctctgct |
242 |
Q |
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| T |
38561149 |
ttctctctattgtgttgcgtgagtggatatttgttctttgct |
38561108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 38605820 - 38605716
Alignment:
| Q |
20 |
tagtagatagctggttcattcacaaatattacataagaatgatgaggtgtgtgtgatacgtatagcatttataaagtaagagtttgagagtgaagtcaaa |
119 |
Q |
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||||| |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| || |||||| |||| | ||||| |
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| T |
38605820 |
tagtaaatagttggttcattcacaaatattccataagagtgatgaggtgtgtgtgatacgtatagcccttataaaggaaaagtttgggagtaaggtcaac |
38605721 |
T |
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| Q |
120 |
atgaa |
124 |
Q |
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||||| |
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| T |
38605720 |
atgaa |
38605716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 38580393 - 38580307
Alignment:
| Q |
149 |
cacccattttgcatatata-catgaaaatcttgaattcacgtacacacttgccttctctctattgtgttgcgtgagtggatatttgtt |
235 |
Q |
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| T |
38580393 |
caccctttttgcatatattgcatgaaaattttga-ttctcgtacacacttgccttctctctgttgtgtcgggtaagtggatatttgtt |
38580307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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