View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11854_low_92 (Length: 248)

Name: NF11854_low_92
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11854_low_92
NF11854_low_92
[»] chr8 (1 HSPs)
chr8 (1-239)||(27775022-27775261)
[»] chr1 (2 HSPs)
chr1 (170-240)||(2755570-2755640)
chr1 (170-239)||(52135134-52135203)
[»] chr2 (2 HSPs)
chr2 (179-233)||(32526215-32526269)
chr2 (172-240)||(14946785-14946853)
[»] chr7 (1 HSPs)
chr7 (170-218)||(33696197-33696245)
[»] chr4 (1 HSPs)
chr4 (170-210)||(43719218-43719258)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27775022 - 27775261
Alignment:
Q  1 cacaccaacacttgcatagttgctttgaatggataaacgacgaatactatgttttgtaagaagcataatatttgatatgaattagtggaaattatacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27775022 cacaccaacacttgcatagttgctttgaatggataaacgacgaatactatgttttgtaagaagcataatatttgatatgaattagtggaaattatacaag 27775121  T
Q  101 tttgacaagcttttgctctatctagtatttgcatctctactttaagattgtgtaagtttgaacatattt-gggttggtctagtggttgctttgagatctt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| || |||||||||||| ||    
T  27775122 tttgacaagcttttgctctatctagtatttgcatctctactttaagattgtgtaagtttgaacccatttggggttggtctattgattgctttgagatttt 27775221  T
Q  200 gaagtatgctcttctcaagttcgcaggttcgattatctct 239  Q
    | ||||||||| | |||||||| |||||||||||||||||    
T  27775222 ggagtatgctcctatcaagttcacaggttcgattatctct 27775261  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 2755570 - 2755640
Alignment:
Q  170 gggttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctctg 240  Q
    |||||||| ||||||||| ||| ||| |||||||||||||| ||||||| ||  ||||| |||||||||||    
T  2755570 gggttggtatagtggttggttttagaccttgaagtatgctcatctcaaggtcttaggtttgattatctctg 2755640  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 52135134 - 52135203
Alignment:
Q  170 gggttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctct 239  Q
    ||||||||||||||||||  ||| ||||||| ||| ||||| ||||||  || |||||||||||||||||    
T  52135134 gggttggtctagtggttgacttgggatcttggagtttgctcatctcaatgtctcaggttcgattatctct 52135203  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 32526269 - 32526215
Alignment:
Q  179 tagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgatt 233  Q
    ||||||||| |||| ||||||||||| ||||| ||||||| || |||||||||||    
T  32526269 tagtggttgatttgggatcttgaagtttgctcctctcaaggtctcaggttcgatt 32526215  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 14946785 - 14946853
Alignment:
Q  172 gttggtctagtggttgctttgagatcttgaagtatgctcttctcaagttcgcaggttcgattatctctg 240  Q
    ||||| ||||||||||  ||||||||||||||| ||||| ||||||| |   |||||||||| ||||||    
T  14946785 gttggcctagtggttgacttgagatcttgaagtttgctcctctcaaggttttaggttcgattttctctg 14946853  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 33696245 - 33696197
Alignment:
Q  170 gggttggtctagtggttgctttgagatcttgaagtatgctcttctcaag 218  Q
    |||||||||||| ||||| |||||| ||||||||| ||||| |||||||    
T  33696245 gggttggtctagcggttgatttgaggtcttgaagtgtgctcctctcaag 33696197  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 43719258 - 43719218
Alignment:
Q  170 gggttggtctagtggttgctttgagatcttgaagtatgctc 210  Q
    |||||||||||||||||| |||||||||||| ||| |||||    
T  43719258 gggttggtctagtggttggtttgagatcttggagtttgctc 43719218  T

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