View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_93 (Length: 245)
Name: NF11854_low_93
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_93 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 38561594 - 38561404
Alignment:
| Q |
55 |
tcacctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
154 |
Q |
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| T |
38561594 |
tcaccttttgattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
38561495 |
T |
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| Q |
155 |
ggttgaagaagaaggtcgacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttagaatt |
245 |
Q |
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| T |
38561494 |
ggttgaagaagaaggtcgacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttagaatt |
38561404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 38606015 - 38605829
Alignment:
| Q |
55 |
tcacctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
154 |
Q |
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| T |
38606015 |
tcacctttggattatagctagggagaagagagttgaggttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
38605916 |
T |
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| Q |
155 |
ggttgaagaagaaggtcgacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttag |
241 |
Q |
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| T |
38605915 |
ggttgaagaagaaggtcgacctccttgttgattttgatccattgaatttttgttacaacaaataacctaaagttgattgggttttag |
38605829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 57 - 245
Target Start/End: Complemental strand, 38580808 - 38580620
Alignment:
| Q |
57 |
acctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttgg |
156 |
Q |
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| T |
38580808 |
acctttggattatagctagggagaatagagttgaggttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttgg |
38580709 |
T |
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| Q |
157 |
ttgaagaagaaggtcgacctccttgttgattttgatccattgaatttttgttacagcaaataacctaaagttgattgggatttagaatt |
245 |
Q |
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| T |
38580708 |
ttgaagaagaaggttgacctccttgttgattatgatccattgaatttttgttacaacaaataacctaaagttgattgggatttagaatt |
38580620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 38622318 - 38622428
Alignment:
| Q |
55 |
tcacctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccacttt |
154 |
Q |
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||||||| | |||||||||||| ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||| | ||||||||| ||||| |
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| T |
38622318 |
tcaccttggaattatagctaggaagaagagagttaagtttggaatagaggatcttcatctgatttctcctatttttctcaacgacctttctttcgacttt |
38622417 |
T |
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| Q |
155 |
ggttgaagaag |
165 |
Q |
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| T |
38622418 |
ggttgaagaag |
38622428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 30195279 - 30195177
Alignment:
| Q |
57 |
acctttggattatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttgg |
156 |
Q |
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||||| ||||||||| |||||||||||||||||||||| || ||||||||||||| || ||||| || ||||| ||||| | | ||||||| ||||||| |
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| T |
30195279 |
accttgggattatagttagggagaagagagttgagtttggagtagaggatcttcatctgatttcttctgtttttttcaacgagccttctttcaactttgg |
30195180 |
T |
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| Q |
157 |
ttg |
159 |
Q |
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||| |
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| T |
30195179 |
ttg |
30195177 |
T |
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