View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_96 (Length: 242)
Name: NF11854_low_96
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_96 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3211265 - 3211044
Alignment:
| Q |
1 |
agaatgaaatatttcgttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtc |
100 |
Q |
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| T |
3211265 |
agaatgaaatatttcgttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtc |
3211166 |
T |
|
| Q |
101 |
aaagttgaagtcatcaagctaattataagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3211165 |
aaagttgaagtcatcaagcta---ataagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagt |
3211069 |
T |
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| Q |
201 |
tacaacatacctgatatagatggag |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3211068 |
tacaacatacctgatatagatggag |
3211044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 3195253 - 3195039
Alignment:
| Q |
8 |
aatatttcgttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttg |
107 |
Q |
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||||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195253 |
aatatttacttaatgatctcaagacatacctaaattgatattcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttg |
3195154 |
T |
|
| Q |
108 |
aagtcatcaagctaattataagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaaca |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195153 |
aagtcatcaagctaat---aagcttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaaca |
3195057 |
T |
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| Q |
208 |
tacctgatatagatggag |
225 |
Q |
| |
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|||||||||||||||||| |
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| T |
3195056 |
tacctgatatagatggag |
3195039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 3218746 - 3218676
Alignment:
| Q |
27 |
caacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtcta |
97 |
Q |
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||||||||||||||||| || ||||| | |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
3218746 |
caacacctacctaaatttatattcagcctcaatgttcctctcatcaatcaaacaacatggtagctattcta |
3218676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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