View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11854_low_99 (Length: 240)
Name: NF11854_low_99
Description: NF11854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11854_low_99 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52911117 - 52910895
Alignment:
| Q |
1 |
tattaagaagtttgtcaatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaacgcaagctcaatccagttaccca |
100 |
Q |
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| T |
52911117 |
tattaagaagtttgtcaatggcaaatgttcgtaattagttgttagactagttttttcctccttcctccgagtttgaacgcaagctcccccccccccccc- |
52911019 |
T |
|
| Q |
101 |
ccaagtatattaagaagtatgttgcatataatactaataaaaaaggtagaatttcttccatctctggtcacagtctgaaaatcaaacaataaaatattaa |
200 |
Q |
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| T |
52911018 |
ccaagtatattaagaagtctgttgcaaataatactaataaaaaaggtagaatttcttccatctctgtacacagtctgaaaatcaaacaataaaatattaa |
52910919 |
T |
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| Q |
201 |
ttacatcaacaaaaccttgtgctt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
52910918 |
ttacatcaacaaaaccttgtgctt |
52910895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 32398831 - 32398772
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac |
78 |
Q |
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| T |
32398831 |
aatggcaaatattagtaattagttgttagattagttttt--ctccttcgtctgagtttgaac |
32398772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 40543096 - 40543146
Alignment:
| Q |
25 |
atgttcgtaattagttgttagactagttttttcctccttcgtccgagtttg |
75 |
Q |
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| T |
40543096 |
atgttagtaattagttgttagaatagtttttttctcctttgtccgggtttg |
40543146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 32858051 - 32857995
Alignment:
| Q |
22 |
caaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac |
78 |
Q |
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| T |
32858051 |
caaatgttagtaattagtagttatattaatttttttctccttcgttcgagtttgaac |
32857995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 33084904 - 33084953
Alignment:
| Q |
18 |
atggcaaatgttcgtaattagttgttagactagttttttcctccttcgtcc |
68 |
Q |
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| T |
33084904 |
atggcaaatgttagtaattagttgttagattagtttttt-ctccttcgtcc |
33084953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1652645 - 1652586
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac |
78 |
Q |
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| T |
1652645 |
aatggcaaatgttggtaattagttgttagattagttttt--ctccttcatccgggtttgaac |
1652586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 28859613 - 28859551
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaacg |
79 |
Q |
| |
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|||| |||||||| |||||||||||||||||| |||||||| ||||||| | ||||||||| |
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| T |
28859613 |
aatgacaaatgtttataattagttgttagactaattttttccaccttcgttagggtttgaacg |
28859551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 50574742 - 50574781
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagtttttt |
56 |
Q |
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| T |
50574742 |
aatggcaaatgttagtaattagttgttagattagtttttt |
50574781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 16622593 - 16622652
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac |
78 |
Q |
| |
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|||| |||||||| |||||||||||||||| |||||||| |||||| ||||||||||||| |
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| T |
16622593 |
aatgacaaatgttagtaattagttgttagattagttttt--ctcctttatccgagtttgaac |
16622652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 21658862 - 21658910
Alignment:
| Q |
19 |
tggcaaatgttcgtaattagttgttagactagttttttcctccttcgtc |
67 |
Q |
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||||||||| | ||| |||||||||||| ||||||||| |||||||||| |
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| T |
21658862 |
tggcaaatgatagtacttagttgttagattagtttttttctccttcgtc |
21658910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 6296963 - 6296925
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttt |
55 |
Q |
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| T |
6296963 |
aatggcaaatgttagtaattagttgttagattagttttt |
6296925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 39107853 - 39107815
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttt |
55 |
Q |
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||||||||||||| |||||||||||||||| |||||||| |
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| T |
39107853 |
aatggcaaatgttagtaattagttgttagaatagttttt |
39107815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 29606 - 29546
Alignment:
| Q |
17 |
aatggcaaatgttcgtaattagttgttagactagttttttcctccttcgtccgagtttgaac |
78 |
Q |
| |
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||||||||||| | ||||||||||||||| ||||||||| |||||||||||| ||| |||| |
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| T |
29606 |
aatggcaaatgctagtaattagttgttagtttagtttttt-ctccttcgtccgggttggaac |
29546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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