View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_high_14 (Length: 413)

Name: NF11855_high_14
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_high_14
NF11855_high_14
[»] chr7 (13 HSPs)
chr7 (74-413)||(48626877-48627216)
chr7 (74-216)||(48627604-48627756)
chr7 (1-60)||(48627282-48627341)
chr7 (101-171)||(23364421-23364491)
chr7 (101-171)||(48626781-48626851)
chr7 (142-203)||(32302974-32303037)
chr7 (80-112)||(48625823-48625855)
chr7 (78-117)||(17890459-17890498)
chr7 (346-413)||(48627390-48627457)
chr7 (117-155)||(17490143-17490181)
chr7 (117-155)||(17563033-17563071)
chr7 (77-110)||(26580658-26580691)
chr7 (73-110)||(43444540-43444577)
[»] chr8 (6 HSPs)
chr8 (281-413)||(1274193-1274325)
chr8 (117-260)||(1274357-1274510)
chr8 (73-123)||(35044423-35044473)
chr8 (101-167)||(21349305-21349371)
chr8 (73-110)||(527733-527770)
chr8 (73-110)||(21349370-21349407)
[»] chr4 (2 HSPs)
chr4 (101-233)||(50463272-50463409)
chr4 (73-110)||(44818680-44818717)
[»] chr2 (3 HSPs)
chr2 (119-203)||(36779991-36780077)
chr2 (128-200)||(15401337-15401411)
chr2 (77-110)||(28020858-28020891)
[»] chr3 (2 HSPs)
chr3 (141-203)||(22981199-22981263)
chr3 (178-207)||(8369419-8369448)
[»] chr1 (9 HSPs)
chr1 (113-207)||(29407739-29407835)
chr1 (124-200)||(34735762-34735840)
chr1 (73-110)||(1169167-1169204)
chr1 (73-110)||(1170121-1170158)
chr1 (73-110)||(29116698-29116735)
chr1 (73-110)||(29117470-29117507)
chr1 (75-135)||(10558057-10558118)
chr1 (73-110)||(13258952-13258989)
chr1 (73-110)||(48578409-48578446)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 74 - 413
Target Start/End: Complemental strand, 48627216 - 48626877
Alignment:
Q  74 gacatatctagtgagaatgacttctttatgtgagaatacattatgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaacaca 173  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  48627216 gacatgtctagtgagaatgacttctttatgtgagaatacattatgagcctttagattaaaattaattggatgagattcaaaaacttcatttaacaacaca 48627117  T
Q  174 tgcctctctctactctatcatttcttttaaacctttcttcctcatctaatattcatcagccatggcatatccaacaattaacatgccnnnnnnnnnnnnn 273  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||                 
T  48627116 tgcctctctctactctatcatttcttttaaacctttcttcctcgtctaatattcatcagccatggcatattcatcaattaacatgcctcttttttctttc 48627017  T
Q  274 nnnnnnngaatcagcaattaacatgactcttgaatgaatgaatcaacgaatcaacctgttgttttgactgttcatcattttaccagcatctgtacccatt 373  Q
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48627016 tttctttgaatcagcaattaacatgactcttgaatgaatgaatcaacaaatcaacctgttgttttgactgttcatcattttaccagcatctgtacccatt 48626917  T
Q  374 cgccacctatctttacctacttcttcatcttcgtcggaat 413  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48626916 cgccacctatctttacctacttcttcatcttcgtcggaat 48626877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 48627756 - 48627604
Alignment:
Q  74 gacatatctagtgagaatgacttctttatgtgagaat--------acattatgagcctttaaattaaaattaattggatgagattaaaaaacttcattta 165  Q
    ||||||||||||||||||||||| |||||||||||||        ||| ||||| || ||| ||||||||| ||||| |||||||||||| | |||||||    
T  48627756 gacatatctagtgagaatgacttttttatgtgagaatgtaagaatacagtatgaaccattagattaaaattgattggttgagattaaaaagcctcattta 48627657  T
Q  166 acaacacat--gcctctctctactctatcatttcttttaaacctttcttcctc 216  Q
    |||| | ||  | ||||||||||||||||||||||||||||||||||||||||    
T  48627656 acaaaaaatatgtctctctctactctatcatttcttttaaacctttcttcctc 48627604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48627341 - 48627282
Alignment:
Q  1 gctagaaagcttgaaattggatctgggattcttcaactttttaatctcagccaatcaacc 60  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  48627341 gctagaaagcttgaaattggatatcggattcttcaactttttaatctcagccaatcaacc 48627282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 23364421 - 23364491
Alignment:
Q  101 atgtgagaatacattatgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaaca 171  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||| |||||||||||||| |||||||||||||    
T  23364421 atgtgagaatatattatgagcccttagattaaaattgattggctgagattaaaaaacctcatttaacaaca 23364491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 48626851 - 48626781
Alignment:
Q  101 atgtgagaatacattatgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaaca 171  Q
    ||||||||||||||||| |||||||| ||||||||| ||||| | |||||||||| | | |||||||||||    
T  48626851 atgtgagaatacattataagcctttatattaaaattgattggctaagattaaaaagcctaatttaacaaca 48626781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 32302974 - 32303037
Alignment:
Q  142 gatgagattaaaaaacttcatttaacaacacat--gcctctctctactctatcatttcttttaa 203  Q
    ||||||||||||||  ||||||| |||||||||  ||||||||||||||| |||||||||||||    
T  32302974 gatgagattaaaaagtttcattttacaacacataagcctctctctactctctcatttcttttaa 32303037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 48625823 - 48625855
Alignment:
Q  80 tctagtgagaatgacttctttatgtgagaatac 112  Q
    |||||||||||||||||||||||||||||||||    
T  48625823 tctagtgagaatgacttctttatgtgagaatac 48625855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 17890498 - 17890459
Alignment:
Q  78 tatctagtgagaatgacttctttatgtgagaatacattat 117  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  17890498 tatctagtgagaatgacttccttatatgagaatacattat 17890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 48627457 - 48627390
Alignment:
Q  346 catcattttaccagcatctgtacccattcgccacctatctttacctacttcttcatcttcgtcggaat 413  Q
    ||||| ||| ||||||||||||||  ||| |||||||| | ||||||||||||||||  |||||||||    
T  48627457 catcaattttccagcatctgtaccggttcaccacctatatgtacctacttcttcatccccgtcggaat 48627390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 17490143 - 17490181
Alignment:
Q  117 tgagcctttaaattaaaattaattggatgagattaaaaa 155  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  17490143 tgagcctttagattaaaattaattggctgagattaaaaa 17490181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 17563071 - 17563033
Alignment:
Q  117 tgagcctttaaattaaaattaattggatgagattaaaaa 155  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  17563071 tgagcctttagattaaaattaattggctgagattaaaaa 17563033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 26580691 - 26580658
Alignment:
Q  77 atatctagtgagaatgacttctttatgtgagaat 110  Q
    ||||||||||| ||||||||||||||||||||||    
T  26580691 atatctagtgaaaatgacttctttatgtgagaat 26580658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 43444577 - 43444540
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  43444577 ggacatatctaatgagaatgacttctttatttgagaat 43444540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 1274325 - 1274193
Alignment:
Q  281 gaatcagcaattaacatgactcttgaatgaatgaatcaacgaatcaacctgttgttttgactgttcatcattttaccagcatctgtacccattcgccacc 380  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1274325 gaatcaacaattaacatgactcttgaatgaatgaatcatcgaatcaacctgttgttttgactgttcatcatttttccagcatctgtacccattcgccacc 1274226  T
Q  381 tatctttacctacttcttcatcttcgtcggaat 413  Q
    ||||| |||||||||||||||||||||||||||    
T  1274225 tatctgtacctacttcttcatcttcgtcggaat 1274193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 260
Target Start/End: Complemental strand, 1274510 - 1274357
Alignment:
Q  117 tgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaacacatgcctctctctactctatcatttcttttaaacctttcttcctc 216  Q
    |||||||||| ||||||||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||    
T  1274510 tgagcctttagattaaaattaattgactgagattaaaaagcctcatttaacaacacatgcctctctctactctatgatttcgttgaaatctttcttcctc 1274411  T
Q  217 at----------ctaatattcatcagccatggcatatccaacaattaacatgcc 260  Q
     |          |||||||||||||||||||||||||||| |||||||||||||    
T  1274410 tttcttcctcgcctaatattcatcagccatggcatatccagcaattaacatgcc 1274357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 35044473 - 35044423
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaatacattatgagcct 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35044473 ggacatatctagtgagaatgacttctttatgtgagaatacattatgagcct 35044423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 21349371 - 21349305
Alignment:
Q  101 atgtgagaatacattatgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaac 167  Q
    |||||||||||||||||||||| ||| ||||||||| ||||| | |||||||||| | |||||||||    
T  21349371 atgtgagaatacattatgagcccttagattaaaattgattggctaagattaaaaagcgtcatttaac 21349305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 527770 - 527733
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    |||||||||||||||||||| |||||||||||||||||    
T  527770 ggacatatctagtgagaatgtcttctttatgtgagaat 527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 21349407 - 21349370
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  21349407 ggacatatctaatgagaatgatttctttatgtgagaat 21349370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 50463272 - 50463409
Alignment:
Q  101 atgtgagaatacattatgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaacacat--gcctctctctactctatcatttct 198  Q
    |||||||||||| || | |||  ||| ||||||||| ||||| |||||||| | | | ||||||||||||| ||  |||||||||||||||||||| |||    
T  50463272 atgtgagaatactttttaagctattagattaaaattgattggctgagattagagagcctcatttaacaacatatatgcctctctctactctatcatctct 50463371  T
Q  199 tttaaacctttcttcct---catctaatattcatcagc 233  Q
    |||||||||||||||||   | ||||||||||||||||    
T  50463372 tttaaacctttcttcctcgccgtctaatattcatcagc 50463409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 44818717 - 44818680
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    |||||||||||||||||||| |||||||||||||||||    
T  44818717 ggacatatctagtgagaatgtcttctttatgtgagaat 44818680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 36779991 - 36780077
Alignment:
Q  119 agcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaacacat--gcctctctctactctatcatttcttttaa 203  Q
    |||||||  ||||||| |||  |||||||||||||||  ||||||| |||||||||  |||||||||||||||||||||||||||||    
T  36779991 agcctttggattaaaactaaacggatgagattaaaaagtttcattttacaacacataagcctctctctactctatcatttcttttaa 36780077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 15401411 - 15401337
Alignment:
Q  128 attaaaattaattggatgagattaaaaaacttcatttaacaacac--atgcctctctctactctatcatttcttt 200  Q
    ||||||||| |||||  ||||||||||| | |||||||| |||||  || |||||| ||||||||||||||||||    
T  15401411 attaaaattgattggccgagattaaaaagcctcatttaataacacatattcctctccctactctatcatttcttt 15401337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 28020891 - 28020858
Alignment:
Q  77 atatctagtgagaatgacttctttatgtgagaat 110  Q
    |||||||||||||||||||||||||| |||||||    
T  28020891 atatctagtgagaatgacttctttatctgagaat 28020858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 22981263 - 22981199
Alignment:
Q  141 ggatgagattaaaaaacttcatttaacaacacat--gcctctctctactctatcatttcttttaa 203  Q
    |||||||||||||||  ||||||| |||||||||  |||||||||||||||||||||||||||||    
T  22981263 ggatgagattaaaaagtttcattttacaacacataagcctctctctactctatcatttcttttaa 22981199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 8369419 - 8369448
Alignment:
Q  178 tctctctactctatcatttcttttaaacct 207  Q
    ||||||||||||||||||||||||||||||    
T  8369419 tctctctactctatcatttcttttaaacct 8369448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 29407835 - 29407739
Alignment:
Q  113 attatgagcctttaaattaaaattaattggatgagattaaaaaacttcatttaacaacacatg--cctctctctactctatcatttcttttaaacct 207  Q
    ||||||| || ||| ||||||||||| || ||||||||||||| | |||||||| | |||||   |||||||| |||||||||||||||||||||||    
T  29407835 attatgaacccttagattaaaattaactgaatgagattaaaaaccctcatttaatagcacatattcctctctccactctatcatttcttttaaacct 29407739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 34735840 - 34735762
Alignment:
Q  124 ttaaattaaaattaattggatgagattaaaaaacttcatttaacaacac--atgcctctctctactctatcatttcttt 200  Q
    ||||||||||||| ||||| |||||||||||  | |||||||| |||||  || |||||| ||||||||||||||||||    
T  34735840 ttaaattaaaattgattggctgagattaaaatgcctcatttaataacacatattcctctccctactctatcatttcttt 34735762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 1169167 - 1169204
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    |||||||||||||||||||| |||||||||||||||||    
T  1169167 ggacatatctagtgagaatgtcttctttatgtgagaat 1169204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 1170158 - 1170121
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    |||||||||||||||||||| |||||||||||||||||    
T  1170158 ggacatatctagtgagaatgtcttctttatgtgagaat 1170121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 29116698 - 29116735
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  29116698 ggacatatctagtgagaatgatttctttatgtgagaat 29116735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 29117507 - 29117470
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  29117507 ggacatatctagtgagaatgatttctttatgtgagaat 29117470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 10558118 - 10558057
Alignment:
Q  75 acatatctagtgagaatgacttctttatgtgagaatacattatgagcc-tttaaattaaaat 135  Q
    ||||||||||||||||||||||  ||||||||||||  ||||| |||| |||| ||||||||    
T  10558118 acatatctagtgagaatgactttcttatgtgagaatgtattatcagccatttagattaaaat 10558057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 13258952 - 13258989
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  13258952 ggacatatctaatgagaatgacttctttatatgagaat 13258989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 48578409 - 48578446
Alignment:
Q  73 ggacatatctagtgagaatgacttctttatgtgagaat 110  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  48578409 ggacatatctagtgagaatgccttctttatatgagaat 48578446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University