View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11855_high_15 (Length: 382)
Name: NF11855_high_15
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11855_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 20828602 - 20828251
Alignment:
| Q |
19 |
tcaaaaaggtcaagtatcaatttcaaataatacaacaaaggccaatactatcatatcattcataagacaaaaggtttagtggggtggtgtctaatttgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20828602 |
tcaaaaaggtcaagtatcaatttcaaataatacaacaaaggccaatactatcatatcattcataagacaaaaggtttagtggggtggtgtctaatttgtt |
20828503 |
T |
|
| Q |
119 |
ggagacacagtaaaatctaaaaggtactattagcattaannnnnnnnnnnnnnnnctaaacacaattataaaaactt--nnnnnnnnnnnntgttctcta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
20828502 |
ggagacacagtaaaatctaaaaggtactattagcattaa----ttttttttttttctaaacacaattataaaaacttaaaaaaaaaaaaaatgttctcta |
20828407 |
T |
|
| Q |
217 |
acacatttattttaatgttattattggtgcaaagtattcacaa-nnnnnnnatcattaatcatctaccttatggcgggtttccccacccatccacatatt |
315 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20828406 |
acacatttattttaatcttattattggtgcaaagtattcacaattattttgatcattaatcatctaccttatggcgggtttccccacccatccacatatt |
20828307 |
T |
|
| Q |
316 |
ttccatctacatgagtttaaacgcgagatcttgcttaattaaggaatttgagttca |
371 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20828306 |
ttccatctacatgagtttaaacacgagatcttgcttaattaaggaatttgagttca |
20828251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University