View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11855_high_16 (Length: 350)

Name: NF11855_high_16
Description: NF11855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11855_high_16
NF11855_high_16
[»] chr6 (9 HSPs)
chr6 (19-340)||(2357947-2358268)
chr6 (30-288)||(2369019-2369277)
chr6 (30-198)||(2363273-2363441)
chr6 (60-166)||(2261198-2261304)
chr6 (26-266)||(2340185-2340425)
chr6 (27-115)||(14753379-14753467)
chr6 (27-114)||(14711309-14711396)
chr6 (19-169)||(2307497-2307647)
chr6 (19-169)||(2351631-2351781)
[»] chr3 (1 HSPs)
chr3 (27-168)||(4305968-4306109)
[»] scaffold0408 (1 HSPs)
scaffold0408 (27-115)||(596-684)
[»] chr4 (1 HSPs)
chr4 (71-266)||(5804059-5804254)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 2357947 - 2358268
Alignment:
Q  19 ttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggact 118  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  2357947 ttcttaacacttataaagatgttgatgttcgagggtgtcactttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggact 2358046  T
Q  119 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358047 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacg 2358146  T
Q  219 gtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358147 gtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccat 2358246  T
Q  319 tatcaaactatgtaaacctttg 340  Q
    ||||||||||||||||||||||    
T  2358247 tatcaaactatgtaaacctttg 2358268  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 2369019 - 2369277
Alignment:
Q  30 cataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgc 129  Q
    |||||||| ||||||||| |||| ||||| |||||| | |||||||||||| |||||||||||||||| || ||||| || ||||| ||  ||||| |||    
T  2369019 cataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgc 2369118  T
Q  130 atttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagc 229  Q
    |||||| |||||||| |||||||||||| |||||||||||  || |||| ||||| |||||||||||||| |||   |||||||| ||   | ||||| |    
T  2369119 atttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaac 2369218  T
Q  230 taccccacttgagattctggttaaaccatgtttgtctgttaattgctacgaaactatgt 288  Q
     || || |||||||||||  |||| ||| ||||||||   |||||||| |||| |||||    
T  2369219 aactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgt 2369277  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 2363273 - 2363441
Alignment:
Q  30 cataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgc 129  Q
    ||||||||| ||||| || ||||  |||| |||||| | |||||||||||| ||||||||||||||||||| |||||||| || || ||  ||||| |||    
T  2363273 cataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgc 2363372  T
Q  130 atttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatga 198  Q
    |||||| |||||||| |||||||||||| |||||||||||  || |||| ||||| |||||||||||||    
T  2363373 atttaactttggctagttttttgcattcctttgaaatcttaaatccatcaagtgaacctattgatatga 2363441  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 2261304 - 2261198
Alignment:
Q  60 tttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcat 159  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  | ||||| ||||||| ||||||||||||||| || || |    
T  2261304 tttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcct 2261205  T
Q  160 ttgaaat 166  Q
    |||||||    
T  2261204 ttgaaat 2261198  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 2340185 - 2340425
Alignment:
Q  26 cactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatg 125  Q
    ||||||||||| |||||||||| ||||  |||| |||||  | |||||||||||||||||||||||||  ||||| |||||||| ||||||||  |||||    
T  2340185 cactcataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatg 2340284  T
Q  126 atgcatttaattttggctaattttttgcattcatttgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctcca 225  Q
     ||||||| |   | |||| |||||||||||| ||||| |||||  || || |   |||  || |||||||||  |||| ||||||||  |||   ||||    
T  2340285 ctgcatttcaccctagctagttttttgcattcctttgatatcttaaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacgaattcca 2340384  T
Q  226 aagctaccccacttgagattctggttaaaccatgtttgtct 266  Q
    ||||||| ||||||||||||||  |||||||| ||||||||    
T  2340385 aagctactccacttgagattctcattaaaccacgtttgtct 2340425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 14753467 - 14753379
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 115  Q
    |||||||||||||||||||||   || ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  14753467 actcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 14711396 - 14711309
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttg 114  Q
    ||||||||||||||||||||| ||||  |||| |||||| | ||||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14711396 actcataaagatgttgatgttagaggtaatcattttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg 14711309  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 2307497 - 2307647
Alignment:
Q  19 ttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggact 118  Q
    |||||| |||||||||||||||||||||| | ||   | | |||| | | || ||||||||||||||||||||||| || || ||||||||  |||||||    
T  2307497 ttcttaccactcataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatcacttggact 2307596  T
Q  119 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 169  Q
      ||||| ||||||| ||| | |||| |||||||||||| ||||| |||||    
T  2307597 tcaaatgctgcatttcattctagctagttttttgcattcctttgatatctt 2307647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 2351631 - 2351781
Alignment:
Q  19 ttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggact 118  Q
    |||||| ||||||||||| |||||||||| ||||  |||| |||||  |  ||||||||||||||||||||||||  ||||| | |||||||||||||||    
T  2351631 ttcttaccactcataaagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggact 2351730  T
Q  119 agaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 169  Q
      ||||  ||||||| | | | || | |||||||||||| ||||| |||||    
T  2351731 tcaaattgtgcatttcactctagcaagttttttgcattcctttgatatctt 2351781  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 4305968 - 4306109
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatga 126  Q
    |||||||||| ||||||||||   || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||     
T  4305968 actcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatgg 4306067  T
Q  127 tgcatttaattttggctaattttttgcattcatttgaaatct 168  Q
    ||||||||  |||||||| |||||||||||| ||||||||||    
T  4306068 tgcatttatctttggctagttttttgcattcctttgaaatct 4306109  T

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Target: scaffold0408 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 596 - 684
Alignment:
Q  27 actcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 115  Q
    |||||||||||||||||||||   || ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  596 actcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 684  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 266
Target Start/End: Complemental strand, 5804254 - 5804059
Alignment:
Q  71 accatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttg 170  Q
    |||||||||||||||||||||||  ||||| ||||||| |||||||||  ||||| ||||||| | | | |||| |||||||||||| ||||| |||||     
T  5804254 accatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatctta 5804155  T
Q  171 tattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtct 266  Q
     || || |   ||| | |||||||||||| ||||  |||||||| ||      ||||||||| |||||||| |||||  |||||||| ||||||||    
T  5804154 aatccaacacctgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcattaaaccacgtttgtct 5804059  T

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